Index (ClearTK 2.0.0 API)

A B C D E F G H I J K L M N O P Q R S T U V W X Z

A

accept(File) - Method in class org.cleartk.examples.chunking.TrainNamedEntityChunker.MascTextFileFilter
accept(File, String) - Method in class org.cleartk.examples.chunking.TrainNamedEntityChunker.MascTextFileFilter
accept(T) - Method in class org.cleartk.feature.FilteringExtractor
accept(File, String) - Method in class org.cleartk.util.cr.RegexFileFilter: Checks to see if the filename matches one of the regular expressions.
accept(File) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemDirectories
accept(File, String) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemDirectories
accept(File) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemFiles
accept(File, String) - Method in class org.cleartk.util.cr.UriCollectionReader.RejectSystemFiles
Ace2005Constants - Interface in org.cleartk.corpus.ace2005: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Ace2005GoldAnnotator - Class in org.cleartk.corpus.ace2005: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Ace2005GoldAnnotator() - Constructor for class org.cleartk.corpus.ace2005.Ace2005GoldAnnotator
Ace2005GoldReader - Class in org.cleartk.corpus.ace2005: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Ace2005GoldReader() - Constructor for class org.cleartk.corpus.ace2005.Ace2005GoldReader
Ace2005Writer - Class in org.cleartk.corpus.ace2005: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Ace2005Writer() - Constructor for class org.cleartk.corpus.ace2005.Ace2005Writer
ACE_2005_APF_URI_VIEW - Static variable in interface org.cleartk.corpus.ace2005.Ace2005Constants: The view containing the XML text of an ACE APF file.
acrf - Variable in class org.cleartk.ml.mallet.grmm.GrmmClassifier
acrf - Variable in class org.cleartk.ml.mallet.grmm.GrmmClassifierBuilder
add(Collection<? extends ANNOTATION_TYPE>, Collection<? extends ANNOTATION_TYPE>) - Method in class org.cleartk.eval.AnnotationStatistics: Update the statistics, comparing the reference annotations to the predicted annotations.
add(Collection<? extends ANNOTATION_TYPE>, Collection<? extends ANNOTATION_TYPE>, Function<ANNOTATION_TYPE, SPAN_TYPE>, Function<ANNOTATION_TYPE, OUTCOME_TYPE>) - Method in class org.cleartk.eval.AnnotationStatistics: Update the statistics, comparing the reference annotations to the predicted annotations.
add(T, T) - Method in class org.cleartk.eval.util.ConfusionMatrix: Increments the entry specified by actual and predicted by one.
add(T, T, int) - Method in class org.cleartk.eval.util.ConfusionMatrix: Increments the entry specified by actual and predicted by count.
add(ConfusionMatrix<T>) - Method in class org.cleartk.eval.util.ConfusionMatrix: Adds the entries from another confusion matrix to this one.
add(double) - Method in class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor.MinMaxRunningStat
add(String) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor.IDFMap
add(double) - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat
add(Feature) - Method in class org.cleartk.ml.Instance: Add a feature to the instance.
add(FeatureVector) - Method in class org.cleartk.ml.util.featurevector.FeatureVector
add(String, int) - Method in class org.cleartk.summarization.SumBasicModel.TermFrequencyMap
addAll(Iterable<AnnotationStatistics<OUTCOME_TYPE>>) - Static method in class org.cleartk.eval.AnnotationStatistics: Add all statistics together.
addAll(AnnotationStatistics<OUTCOME_TYPE>) - Method in class org.cleartk.eval.AnnotationStatistics: Adds all the statistics collected by another AnnotationStatistics to this one.
addAll(Collection<Feature>) - Method in class org.cleartk.ml.Instance: Add a collection of features to the instance.
addChild(TreebankNode) - Method in class org.cleartk.util.treebank.TreebankNode
addCorefRelation(PropbankRelation) - Method in class org.cleartk.corpus.propbank.util.PropbankCorefRelation
addEncoder(FeatureEncoder<ENCODED_TYPE>) - Method in class org.cleartk.ml.encoder.features.FeatureEncoderChain
addEncoder(FeatureEncoder<NameNumber>) - Method in class org.cleartk.ml.tksvmlight.TreeFeatureVectorFeaturesEncoder
addParse(JCas, Tree<String>, SENTENCE_TYPE, List<TOKEN_TYPE>) - Method in class org.cleartk.berkeleyparser.DefaultOutputTypesHelper
addParse(JCas, PARSE_TYPE, SENTENCE_TYPE, List<TOKEN_TYPE>) - Method in interface org.cleartk.berkeleyparser.OutputTypesHelper
addParse(JCas, Parse, SENTENCE_TYPE, List<TOKEN_TYPE>) - Method in class org.cleartk.opennlp.tools.parser.DefaultOutputTypesHelper
addParse(JCas, PARSE_TYPE, SENTENCE_TYPE, List<TOKEN_TYPE>) - Method in interface org.cleartk.opennlp.tools.parser.OutputTypesHelper
addPosTags(List<GeniaTag>) - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
addPosTags(List<GeniaTag>) - Method in class org.cleartk.corpus.genia.pos.util.GeniaSentence
addProplabel(Proplabel) - Method in class org.cleartk.corpus.propbank.util.Propbank
addRelation(PropbankRelation) - Method in class org.cleartk.corpus.propbank.util.PropbankSplitRelation
addScores - Variable in class org.cleartk.ml.viterbi.ViterbiClassifier
addSemTags(List<GeniaTag>) - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
addSemTags(List<GeniaTag>) - Method in class org.cleartk.corpus.genia.pos.util.GeniaSentence
addSentence(GeniaSentence) - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
addToBuffer(String) - Method in class org.cleartk.util.InputStreamHandler
ALL_TESTS_PROPERTY_VALUE - Static variable in class org.cleartk.test.util.CleartkTestBase: Value for the CleartkTestBase.SKIP_TESTS_PROPERTY property that indicates that all tests that can be skipped are disabled.
allFalseFile - Variable in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeDataWriter
allFalseWriter - Variable in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeDataWriter
ampersandPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
ampersandRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
annotatedClass - Variable in class org.cleartk.timeml.eval.ModelInfo
annotatedFeatureName - Variable in class org.cleartk.timeml.eval.ModelInfo
AnnotationStatistics<OUTCOME_TYPE extends Comparable<? super OUTCOME_TYPE>> - Class in org.cleartk.eval: Stores statistics for comparing Annotations extracted by a system to gold Annotations.
AnnotationStatistics() - Constructor for class org.cleartk.eval.AnnotationStatistics: Create an AnnotationStatistics that compares Annotations based on their begin and end offsets, plus a Feature of the Annotation that represents the outcome or label.
annotationToFeatureValue(String) - Static method in class org.cleartk.eval.AnnotationStatistics: Creates a Function that extracts a feature value from a TOP.
annotationToNull() - Static method in class org.cleartk.eval.AnnotationStatistics: Creates a Function that always returns null.
annotationToSpan() - Static method in class org.cleartk.eval.AnnotationStatistics: Creates a Function that converts an Annotation into a hashable representation of its begin and end offsets.
AnnotationUtil - Class in org.cleartk.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
AnnotationUtil() - Constructor for class org.cleartk.util.AnnotationUtil
AnnotationWriter<ANNOTATION_TYPE extends Annotation> - Interface in org.cleartk.util.ae.linewriter: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
apply(Feature) - Method in class org.cleartk.ml.feature.function.CapitalTypeFeatureFunction: If the value of the feature is a StringValue and is determined to be one of ALL_UPPERCASE, ALL_LOWERCASE, INITIAL_UPPERCASE, or MIXED_CASE, then a new feature containing one of those four values is returned.
apply(Feature) - Method in class org.cleartk.ml.feature.function.CharacterCategoryPatternFunction
apply(Feature) - Method in class org.cleartk.ml.feature.function.CharacterNgramFeatureFunction
apply(Feature) - Method in class org.cleartk.ml.feature.function.ContainsHyphenFeatureFunction
apply(Function<Feature, List<Feature>>, List<Feature>) - Static method in class org.cleartk.ml.feature.function.FeatureFunctionExtractor
apply(Feature) - Method in class org.cleartk.ml.feature.function.LowerCaseFeatureFunction
apply(Feature) - Method in class org.cleartk.ml.feature.function.NumericTypeFeatureFunction: If the value of the feature is a StringValue and is determined to be one of DIGITS, YEAR_DIGITS, ALPHANUMERIC, SOME_DIGITS, or ROMAN_NUMERAL, then a feature containing one of those five values is returned.
apply(Feature) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor
apply(Map<OUTCOME_T, Double>) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod.AverageScores
apply(Map<OUTCOME_T, Double>) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod.MaxScores
apply(String) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats.ComputeFeatureScore
ARCH_PPC - Static variable in class org.cleartk.util.PlatformDetection
ARCH_X86_32 - Static variable in class org.cleartk.util.PlatformDetection
ARCH_X86_64 - Static variable in class org.cleartk.util.PlatformDetection
ArrayFeatureVector - Class in org.cleartk.ml.util.featurevector: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
ArrayFeatureVector() - Constructor for class org.cleartk.ml.util.featurevector.ArrayFeatureVector
assumeBigMemoryTestsEnabled() - Method in class org.cleartk.test.util.CleartkTestBase: Subclasses should call this method at the beginning of a test that will take a long time to run.
assumeLongTestsEnabled() - Method in class org.cleartk.test.util.CleartkTestBase: Subclasses should call this method at the beginning of a test that will take a long time to run.
assumeTestsEnabled(String...) - Method in class org.cleartk.test.util.CleartkTestBase: Subclasses should call this method at the beginning of a test to check whether a specific type of test is enabled by checking whether the name of that test is contained in the "cleartk.skipTests" property.
ATTRIBUTES_NAME - Static variable in class org.cleartk.ml.libsvm.GenericLibSvmClassifierBuilder

B

BagEncoder - Class in org.cleartk.ml.encoder.features: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
BagEncoder(String, NameNumberNormalizer) - Constructor for class org.cleartk.ml.encoder.features.BagEncoder
BagEncoder(String) - Constructor for class org.cleartk.ml.encoder.features.BagEncoder
BagEncoder(NameNumberNormalizer) - Constructor for class org.cleartk.ml.encoder.features.BagEncoder
BagEncoder() - Constructor for class org.cleartk.ml.encoder.features.BagEncoder
BASE_SEGMENTATION_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
BaseConversion - Class in org.cleartk.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
BaseConversion() - Constructor for class org.cleartk.util.BaseConversion
baseDirectory - Variable in class org.cleartk.eval.Evaluation_ImplBase
baseForm - Variable in class org.cleartk.corpus.propbank.util.Propbank
BasicDocumentClassificationAnnotator - Class in org.cleartk.examples.documentclassification.basic: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
BasicDocumentClassificationAnnotator() - Constructor for class org.cleartk.examples.documentclassification.basic.BasicDocumentClassificationAnnotator
batchProcessComplete() - Method in class org.cleartk.corpus.timeml.TempEval2010Writer
beginOrEndPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
beginOrEndRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
betweenExtractors - Variable in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase
BiesoChunking<SUB_CHUNK_TYPE extends Annotation,CHUNK_TYPE extends Annotation> - Class in org.cleartk.ml.chunking: Chunking with Begin-Inside-End-Singleton-Outside labels.
BiesoChunking(Class<? extends SUB_CHUNK_TYPE>, Class<? extends CHUNK_TYPE>) - Constructor for class org.cleartk.ml.chunking.BiesoChunking
BiesoChunking(Class<? extends SUB_CHUNK_TYPE>, Class<? extends CHUNK_TYPE>, String) - Constructor for class org.cleartk.ml.chunking.BiesoChunking
BIG_MEMORY_TEST_MESSAGE - Static variable in class org.cleartk.test.util.CleartkTestBase: A message indicating that the current test requires a lot of memory, and giving instructions how to skip it.
BIG_MEMORY_TESTS_PROPERTY_VALUE - Static variable in class org.cleartk.test.util.CleartkTestBase: Value for the CleartkTestBase.SKIP_TESTS_PROPERTY property that indicates that tests requiring a lot of memory should be disabled.
BioChunking<SUB_CHUNK_TYPE extends Annotation,CHUNK_TYPE extends Annotation> - Class in org.cleartk.ml.chunking: Chunking with Begin-Inside-Outside labels
Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
BioChunking(Class<? extends SUB_CHUNK_TYPE>, Class<? extends CHUNK_TYPE>) - Constructor for class org.cleartk.ml.chunking.BioChunking
BioChunking(Class<? extends SUB_CHUNK_TYPE>, Class<? extends CHUNK_TYPE>, String) - Constructor for class org.cleartk.ml.chunking.BioChunking
BlankLineBlockWriter - Class in org.cleartk.util.ae.linewriter.block: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
BlankLineBlockWriter() - Constructor for class org.cleartk.util.ae.linewriter.block.BlankLineBlockWriter
BlockWriter<BLOCK_TYPE extends Annotation> - Interface in org.cleartk.util.ae.linewriter: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
BooleanEncoder - Class in org.cleartk.ml.encoder.features: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
BooleanEncoder() - Constructor for class org.cleartk.ml.encoder.features.BooleanEncoder
BooleanToBooleanOutcomeEncoder - Class in org.cleartk.ml.encoder.outcome: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
BooleanToBooleanOutcomeEncoder() - Constructor for class org.cleartk.ml.encoder.outcome.BooleanToBooleanOutcomeEncoder
BooleanToSignOutcomeEncoder - Class in org.cleartk.ml.encoder.outcome: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
BooleanToSignOutcomeEncoder() - Constructor for class org.cleartk.ml.encoder.outcome.BooleanToSignOutcomeEncoder
BooleanToStringOutcomeEncoder - Class in org.cleartk.ml.encoder.outcome: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
BooleanToStringOutcomeEncoder() - Constructor for class org.cleartk.ml.encoder.outcome.BooleanToStringOutcomeEncoder
bracesPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
bracesRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
BreakIteratorAnnotator - Class in org.cleartk.token.breakit: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
BreakIteratorAnnotator() - Constructor for class org.cleartk.token.breakit.BreakIteratorAnnotator
BreakIteratorAnnotator.BreakIteratorType - Enum in org.cleartk.token.breakit
BreakIteratorAnnotatorFactory - Class in org.cleartk.token.breakit: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
BreakIteratorAnnotatorFactory() - Constructor for class org.cleartk.token.breakit.BreakIteratorAnnotatorFactory
buffer - Variable in class org.cleartk.summarization.SummarySentenceWriterAnnotator
builder - Variable in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifierBuilder
buildExtractAggregate() - Method in class org.cleartk.summarization.SumBasic
BuildJar - Class in org.cleartk.ml.jar: Command line tool for building a model jar file from a directory where a model has been trained, e.g.
BuildJar() - Constructor for class org.cleartk.ml.jar.BuildJar
BuildTestExamplePosModel - Class in org.cleartk.examples.pos: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
BuildTestExamplePosModel() - Constructor for class org.cleartk.examples.pos.BuildTestExamplePosModel
buildTrainingAggregate() - Method in class org.cleartk.summarization.SumBasic

C

C45TrainerFactory - Class in org.cleartk.ml.mallet.factory: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
C45TrainerFactory() - Constructor for class org.cleartk.ml.mallet.factory.C45TrainerFactory
CapitalTypeFeatureFunction - Class in org.cleartk.ml.feature.function: Copyright (c) 2007-2012, Regents of the University of Colorado
All rights reserved.
CapitalTypeFeatureFunction() - Constructor for class org.cleartk.ml.feature.function.CapitalTypeFeatureFunction
CapitalTypeFeatureFunction.CapitalType - Enum in org.cleartk.ml.feature.function
CaseUtil - Class in org.cleartk.ml.feature.util: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
CaseUtil() - Constructor for class org.cleartk.ml.feature.util.CaseUtil
CasPosTagger<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation> - Class in org.cleartk.opennlp.tools.parser: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
CasPosTagger(InputTypesHelper<TOKEN_TYPE, SENTENCE_TYPE>) - Constructor for class org.cleartk.opennlp.tools.parser.CasPosTagger
casTagger - Variable in class org.cleartk.opennlp.tools.ParserAnnotator
CENTROID_TFIDF_SIM_EXTRACTOR_KEY - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
CentroidTfidfSimilarityExtractor<OUTCOME_T,FOCUS_T extends Annotation> - Class in org.cleartk.ml.feature.transform.extractor: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
CentroidTfidfSimilarityExtractor(String) - Constructor for class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor
CentroidTfidfSimilarityExtractor(String, FeatureExtractor1<FOCUS_T>) - Constructor for class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor
CharacterCategoryPatternFunction<T extends Annotation> - Class in org.cleartk.ml.feature.function: A feature extractor that generates a pattern based on the Unicode categories of each of the characters in the annotation text.
CharacterCategoryPatternFunction() - Constructor for class org.cleartk.ml.feature.function.CharacterCategoryPatternFunction: Create the standard feature extractor, where one category is added to the feature value for each character in the text.
CharacterCategoryPatternFunction(CharacterCategoryPatternFunction.PatternType) - Constructor for class org.cleartk.ml.feature.function.CharacterCategoryPatternFunction: Create a feature extractor with the specified pattern type.
CharacterCategoryPatternFunction.PatternType - Enum in org.cleartk.ml.feature.function: The type of pattern to generate in feature values.
CharacterNgramFeatureFunction - Class in org.cleartk.ml.feature.function: Copyright (c) 2007-2012, Regents of the University of Colorado
All rights reserved.
CharacterNgramFeatureFunction(String, CharacterNgramFeatureFunction.Orientation, int, int, int, boolean) - Constructor for class org.cleartk.ml.feature.function.CharacterNgramFeatureFunction: This feature function serves up character n-grams based on StringValued features.
CharacterNgramFeatureFunction(CharacterNgramFeatureFunction.Orientation, int, int, int, boolean) - Constructor for class org.cleartk.ml.feature.function.CharacterNgramFeatureFunction
CharacterNgramFeatureFunction(String, CharacterNgramFeatureFunction.Orientation, int, int) - Constructor for class org.cleartk.ml.feature.function.CharacterNgramFeatureFunction
CharacterNgramFeatureFunction(CharacterNgramFeatureFunction.Orientation, int, int) - Constructor for class org.cleartk.ml.feature.function.CharacterNgramFeatureFunction
CharacterNgramFeatureFunction.Orientation - Enum in org.cleartk.ml.feature.function
checkTypeParameterIsAssignable(Class<T>, String, T, Class<U>, String, U) - Static method in class org.cleartk.util.ReflectionUtil: Checks that the given type parameters of the given objects are compatible.
checkTypeParametersAreEqual(Class<T>, String, T, Class<U>, String, U, Class<E>) - Static method in class org.cleartk.util.ReflectionUtil: Checks that the given type parameters of the given objects are exactly equal.
chunkClass - Variable in class org.cleartk.ml.chunking.Chunking_ImplBase
Chunking<OUTCOME_TYPE,SUB_CHUNK_TYPE extends Annotation,CHUNK_TYPE extends Annotation> - Interface in org.cleartk.ml.chunking: Interface for classes that assemble individual classifier outcomes on smaller annotations ("sub-chunks") to form larger annotations ("chunks").
Chunking_ImplBase<SUB_CHUNK_TYPE extends Annotation,CHUNK_TYPE extends Annotation> - Class in org.cleartk.ml.chunking: Base class for classes that assemble individual classifier outcomes on smaller annotations ("sub-chunks") to form larger annotations ("chunks").
Chunking_ImplBase(Class<? extends SUB_CHUNK_TYPE>, Class<? extends CHUNK_TYPE>, String) - Constructor for class org.cleartk.ml.chunking.Chunking_ImplBase
classConditionalCounts - Variable in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats
classCounts - Variable in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats
Classifier<OUTCOME_TYPE> - Interface in org.cleartk.ml: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
classifier - Variable in class org.cleartk.ml.CleartkAnnotator
classifier - Variable in class org.cleartk.ml.CleartkSequenceAnnotator
classifier - Variable in class org.cleartk.ml.mallet.MalletClassifier_ImplBase
classifier - Variable in class org.cleartk.ml.mallet.MalletClassifierBuilder_ImplBase
Classifier_ImplBase<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for Classifier implementations that use FeaturesEncoders and OutcomeEncoders.
Classifier_ImplBase(FeaturesEncoder<ENCODED_FEATURES_TYPE>, OutcomeEncoder<OUTCOME_TYPE, ENCODED_OUTCOME_TYPE>) - Constructor for class org.cleartk.ml.jar.Classifier_ImplBase
classifierBuilder - Variable in class org.cleartk.ml.jar.DirectoryDataWriter
ClassifierBuilder_ImplBase<CLASSIFIER_TYPE extends Classifier<OUTCOME_TYPE>,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for builders which write to a training data file using FeaturesEncoders and OutcomeEncoders, and build and package Classifiers as jar files.
ClassifierBuilder_ImplBase() - Constructor for class org.cleartk.ml.jar.ClassifierBuilder_ImplBase
ClassifierFactory<OUTCOME_TYPE> - Interface in org.cleartk.ml: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
classifierFactory - Variable in class org.cleartk.ml.multi.CleartkMultiAnnotator
classifierJarPathRoot - Variable in class org.cleartk.ml.multi.CleartkMultiAnnotator
classifiers - Variable in class org.cleartk.ml.multi.CleartkMultiAnnotator
ClassifierTrainerFactory<C extends Classifier> - Interface in org.cleartk.ml.mallet.factory: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
classify(List<Feature>) - Method in class org.cleartk.ml.baseline.SingleOutcomeClassifier
classify(List<Feature>) - Method in interface org.cleartk.ml.Classifier: Classifies a list of features.
classify(List<Instance<OUTCOME_TYPE>>) - Method in class org.cleartk.ml.CleartkSequenceAnnotator
classify(List<List<Feature>>) - Method in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeClassifier
classify(List<Feature>) - Method in class org.cleartk.ml.liblinear.GenericLibLinearClassifier
classify(List<Feature>) - Method in class org.cleartk.ml.libsvm.LibSvmClassifier
classify(List<List<Feature>>) - Method in class org.cleartk.ml.mallet.grmm.GrmmClassifier: This method classifies several instances at once
classify(List<Feature>) - Method in class org.cleartk.ml.mallet.MalletClassifier_ImplBase
classify(List<List<Feature>>) - Method in class org.cleartk.ml.mallet.MalletCrfStringOutcomeClassifier: This method classifies several instances at once
classify(List<Feature>) - Method in class org.cleartk.ml.opennlp.maxent.MaxentClassifier_ImplBase
classify(List<List<Feature>>) - Method in interface org.cleartk.ml.SequenceClassifier: Classifies a sequence of feature lists.
classify(List<Feature>) - Method in class org.cleartk.ml.svmlight.SvmLightClassifier_ImplBase
classify(List<Feature>) - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeClassifier
classify(List<Feature>) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmBooleanOutcomeClassifier
classify(List<Feature>) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifier: Classify a features list.
classify(List<List<Feature>>) - Method in class org.cleartk.ml.viterbi.ViterbiClassifier
classify(List<Feature>) - Method in class org.cleartk.ml.weka.WekaStringOutcomeClassifier
classify(List<Feature>) - Method in class org.cleartk.summarization.classifier.SummarizationClassifier
classifyChar(char) - Method in class org.cleartk.ml.feature.function.CharacterCategoryPatternFunction
classifyFeatures(String, String, int) - Method in class org.cleartk.ml.crfsuite.CrfSuiteWrapper
classifyFeatures(File, File, int) - Method in class org.cleartk.ml.crfsuite.CrfSuiteWrapper
classifyFeatures(List<List<Feature>>, OutcomeEncoder<String, String>, FeaturesEncoder<List<NameNumber>>, File) - Method in class org.cleartk.ml.crfsuite.CrfSuiteWrapper
cleanUPRegex1 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser
cleanUPRegex2 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser
cleanUPRegex3 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser
cleanUPRegex4 - Static variable in class org.cleartk.util.treebank.TreebankFormatParser
clear() - Method in class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor.MinMaxRunningStat
clear() - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat
CleartkAnnotator<OUTCOME_TYPE> - Class in org.cleartk.ml: Copyright (c) 2009-2011, Regents of the University of Colorado
All rights reserved.
CleartkAnnotator() - Constructor for class org.cleartk.ml.CleartkAnnotator
CleartkDependencyOps - Class in org.cleartk.clearnlp: Defines common set of dependency graph data type operations used to convert and query ClearTK dependency types such as TopDependencyNode, DependencyNode and DependencyRelation
CleartkDependencyOps() - Constructor for class org.cleartk.clearnlp.CleartkDependencyOps
CleartkEncoderException - Exception in org.cleartk.ml.encoder: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
CleartkEncoderException(Throwable, String, String, Object...) - Constructor for exception org.cleartk.ml.encoder.CleartkEncoderException
CleartkEncoderException(String, String, Object...) - Constructor for exception org.cleartk.ml.encoder.CleartkEncoderException
CleartkEncoderException(Throwable) - Constructor for exception org.cleartk.ml.encoder.CleartkEncoderException
CleartkExtractor<FOCUS_T extends Annotation,SEARCH_T extends Annotation> - Class in org.cleartk.ml.feature.extractor: A feature extractor that finds other Annotations in the context of a focus annotation and extracts features from these.
CleartkExtractor(Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>, CleartkExtractor.Context...) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor: Create an extractor that finds Annotations of the given type at the specified CleartkExtractor.Contexts and applies the given feature extractor to the annotations.
CleartkExtractor.Bag - Class in org.cleartk.ml.feature.extractor: A CleartkExtractor.Context that aggregates the features of other contexts into a "bag" where position information of each individual feature is no longer maintained.
CleartkExtractor.Bag(CleartkExtractor.Context...) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.Bag: Constructs a CleartkExtractor.Context which converts the features extracted by the argument contexts into a bag of features where all features have the same name.
CleartkExtractor.Bounds - Interface in org.cleartk.ml.feature.extractor: A class representing the bounds within which a CleartkExtractor should look for annotations.
CleartkExtractor.Context - Interface in org.cleartk.ml.feature.extractor: A class representing a location that a CleartkExtractor should look for annotations.
CleartkExtractor.Count - Class in org.cleartk.ml.feature.extractor: A CleartkExtractor.Context that aggregates the features of other contexts into a bag of counts where only the count of occurrence of each feature value is maintained.
CleartkExtractor.Count(CleartkExtractor.Context...) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.Count: Constructs a CleartkExtractor.Context which converts the features extracted by the argument contexts into a bag of count features.
CleartkExtractor.Covered - Class in org.cleartk.ml.feature.extractor: A CleartkExtractor.Context for extracting all annotations within the focus annotation.
CleartkExtractor.Covered() - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.Covered: Constructs a context that will extract features over all annotations within the focus annotation.
CleartkExtractor.FirstCovered - Class in org.cleartk.ml.feature.extractor: A CleartkExtractor.Context for extracting the first annotations within the focus annotation.
CleartkExtractor.FirstCovered(int) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.FirstCovered: Constructs a context that will extract features over the first N annotations within the focus annotation.
CleartkExtractor.FirstCovered(int, int) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.FirstCovered: Constructs a context that will extract features over a slice of the first N annotations within the focus annotation.
CleartkExtractor.Focus - Class in org.cleartk.ml.feature.extractor: A CleartkExtractor.Context for extracting the focus annotation.
CleartkExtractor.Focus() - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.Focus: Constructs a context that will extract features over the focus annotation.
CleartkExtractor.Following - Class in org.cleartk.ml.feature.extractor: A CleartkExtractor.Context for extracting annotations appearing after the focus annotation.
CleartkExtractor.Following(int) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.Following: Constructs a context that will extract features over the following N annotations.
CleartkExtractor.Following(int, int) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.Following: Constructs a context that will extract features over a slice of the following N annotations.
CleartkExtractor.LastCovered - Class in org.cleartk.ml.feature.extractor: A CleartkExtractor.Context for extracting the last annotations within the focus annotation.
CleartkExtractor.LastCovered(int) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.LastCovered: Constructs a context that will extract features over the last N annotations within the focus annotation.
CleartkExtractor.LastCovered(int, int) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.LastCovered: Constructs a context that will extract features over a slice of the last N annotations within the focus annotation.
CleartkExtractor.NestedCountFeature - Class in org.cleartk.ml.feature.extractor
CleartkExtractor.NestedCountFeature(String, Feature, Object) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.NestedCountFeature
CleartkExtractor.Ngram - Class in org.cleartk.ml.feature.extractor: A CleartkExtractor.Context that aggregates the features of other contexts into a single "ngram" feature, where the feature values are concatenated together in order to form a single value.
CleartkExtractor.Ngram(CleartkExtractor.Context...) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.Ngram: Constructs a CleartkExtractor.Context which converts the features extracted by the argument contexts into a single ngram feature where all feature values have been concatenated together.
CleartkExtractor.Ngrams - Class in org.cleartk.ml.feature.extractor: A CleartkExtractor.Context that aggregates the features of other contexts into several "ngrams" features, where sub-sequences of the feature values are concatenated together in order to form single values.
CleartkExtractor.Ngrams(int, CleartkExtractor.Context...) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.Ngrams: Constructs a CleartkExtractor.Context which converts the features extracted by the argument contexts into ngram features where sub-sequences feature values have been concatenated together.
CleartkExtractor.Preceding - Class in org.cleartk.ml.feature.extractor: A CleartkExtractor.Context for extracting annotations appearing before the focus annotation.
CleartkExtractor.Preceding(int) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.Preceding: Constructs a context that will extract features over the preceding N annotations.
CleartkExtractor.Preceding(int, int) - Constructor for class org.cleartk.ml.feature.extractor.CleartkExtractor.Preceding: Constructs a context that will extract features over a slice of the preceding N annotations.
CleartkExtractorException - Exception in org.cleartk.ml.feature.extractor: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
CleartkExtractorException(Throwable, String, String, Object...) - Constructor for exception org.cleartk.ml.feature.extractor.CleartkExtractorException
CleartkExtractorException(String, String, Object...) - Constructor for exception org.cleartk.ml.feature.extractor.CleartkExtractorException
CleartkExtractorException(Throwable) - Constructor for exception org.cleartk.ml.feature.extractor.CleartkExtractorException
CleartkInitializationException - Exception in org.cleartk.util: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
CleartkInitializationException(String, String, Object...) - Constructor for exception org.cleartk.util.CleartkInitializationException
CleartkInitializationException(Throwable, String, String, Object...) - Constructor for exception org.cleartk.util.CleartkInitializationException
CleartkInternalModelFactory - Class in org.cleartk.timeml.util: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
CleartkInternalModelFactory() - Constructor for class org.cleartk.timeml.util.CleartkInternalModelFactory
CleartkMultiAnnotator<OUTCOME_TYPE> - Class in org.cleartk.ml.multi: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
CleartkMultiAnnotator() - Constructor for class org.cleartk.ml.multi.CleartkMultiAnnotator
CleartkProcessingException - Exception in org.cleartk.ml: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
CleartkProcessingException(Throwable, String, String, Object...) - Constructor for exception org.cleartk.ml.CleartkProcessingException
CleartkProcessingException(String, String, Object...) - Constructor for exception org.cleartk.ml.CleartkProcessingException
CleartkProcessingException(Throwable) - Constructor for exception org.cleartk.ml.CleartkProcessingException
CleartkSemanticRoleOps - Class in org.cleartk.clearnlp: Defines common set of token data type operations used to convert output from semantic role labelers into the annotations and properties for SemanticArgument and Predicate
CleartkSemanticRoleOps() - Constructor for class org.cleartk.clearnlp.CleartkSemanticRoleOps
CleartkSequenceAnnotator<OUTCOME_TYPE> - Class in org.cleartk.ml: Copyright (c) 2009-2011, Regents of the University of Colorado
All rights reserved.
CleartkSequenceAnnotator() - Constructor for class org.cleartk.ml.CleartkSequenceAnnotator
CleartkTestBase - Class in org.cleartk.test.util: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
CleartkTestBase() - Constructor for class org.cleartk.test.util.CleartkTestBase
CleartkTokenOps - Class in org.cleartk.clearnlp: Defines common set of token data type operations used to convert output from tokenizers, pos taggers, and lemmatizers into the annotations and properties of Token
CleartkTokenOps() - Constructor for class org.cleartk.clearnlp.CleartkTokenOps
close() - Method in class org.cleartk.corpus.ace2005.Ace2005GoldReader
close() - Method in class org.cleartk.corpus.conll2003.Conll2003GoldReader
close() - Method in class org.cleartk.corpus.conll2005.Conll2005GoldReader
close() - Method in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
close() - Method in class org.cleartk.corpus.penntreebank.PennTreebankReader
close() - Method in class org.cleartk.corpus.propbank.PropbankGoldReader
close() - Method in class org.cleartk.util.cr.FilesCollectionReader
close() - Method in class org.cleartk.util.cr.linereader.LineReader
closedBracesRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
collectInstances(AnalysisEngine, JCas) - Static method in class org.cleartk.ml.util.PublicFieldDataWriter.BooleanFactory
collectInstances(AnalysisEngine, JCas) - Static method in class org.cleartk.ml.util.PublicFieldDataWriter.StringFactory
collectInstances(AnalysisEngine, JCas) - Static method in class org.cleartk.ml.util.PublicFieldSequenceDataWriter.BooleanFactory
collectInstances(AnalysisEngine, JCas) - Static method in class org.cleartk.ml.util.PublicFieldSequenceDataWriter.StringFactory
collectionProcessComplete() - Method in class org.cleartk.berkeleyparser.ParserAnnotator
collectionProcessComplete() - Method in class org.cleartk.corpus.conll2005.Conll2005Writer
collectionProcessComplete() - Method in class org.cleartk.corpus.timeml.TempEval2010Writer
collectionProcessComplete() - Method in class org.cleartk.maltparser.MaltParser
collectionProcessComplete() - Method in class org.cleartk.ml.CleartkAnnotator
collectionProcessComplete() - Method in class org.cleartk.ml.CleartkSequenceAnnotator
collectionProcessComplete() - Method in class org.cleartk.ml.multi.CleartkMultiAnnotator
collectionProcessComplete() - Method in class org.cleartk.summarization.SummarySentenceWriterAnnotator
collectionProcessComplete() - Method in class org.cleartk.util.ae.linewriter.LineWriter
collectSections(File, List<File>, ListSpecification) - Static method in class org.cleartk.corpus.penntreebank.PennTreebankReader: This will add all the .mrg files in the given WSJ sections to treebankFiles.
colonPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
colonRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
CombinedExtractor1<T extends Annotation> - Class in org.cleartk.ml.feature.extractor: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
CombinedExtractor1(List<FeatureExtractor1<T>>) - Constructor for class org.cleartk.ml.feature.extractor.CombinedExtractor1
CombinedExtractor1(FeatureExtractor1<T>, FeatureExtractor1<T>) - Constructor for class org.cleartk.ml.feature.extractor.CombinedExtractor1
CombinedExtractor1(FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>) - Constructor for class org.cleartk.ml.feature.extractor.CombinedExtractor1
CombinedExtractor1(FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>) - Constructor for class org.cleartk.ml.feature.extractor.CombinedExtractor1
CombinedExtractor1(FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>) - Constructor for class org.cleartk.ml.feature.extractor.CombinedExtractor1
CombinedExtractor1(FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>) - Constructor for class org.cleartk.ml.feature.extractor.CombinedExtractor1
CombinedExtractor1(FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>) - Constructor for class org.cleartk.ml.feature.extractor.CombinedExtractor1
CombinedExtractor1(FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>) - Constructor for class org.cleartk.ml.feature.extractor.CombinedExtractor1
CombinedExtractor1(FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>, FeatureExtractor1<T>) - Constructor for class org.cleartk.ml.feature.extractor.CombinedExtractor1
COMMAND_ARGUMENT - Static variable in class org.cleartk.ml.svmlight.SvmLightClassifierBuilder_ImplBase
COMMAND_ARGUMENT - Static variable in class org.cleartk.ml.tksvmlight.TkSvmLightBooleanOutcomeClassifierBuilder
commaPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
commaRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
COMMON_TESTS_PROPERTY_VALUE - Static variable in class org.cleartk.test.util.CleartkTestBase: Value for the CleartkTestBase.SKIP_TESTS_PROPERTY property that indicates that commonly skipped tests should be disabled.
completed - Variable in class org.cleartk.util.cr.FilesCollectionReader
CompositeKernel - Class in org.cleartk.ml.tksvmlight.model: Copyright (c) 2013, Regents of the University of Colorado
All rights reserved.
CompositeKernel(Kernel, TreeKernel) - Constructor for class org.cleartk.ml.tksvmlight.model.CompositeKernel
CompositeKernel(Kernel, TreeKernel, CompositeKernel.ComboOperator) - Constructor for class org.cleartk.ml.tksvmlight.model.CompositeKernel
CompositeKernel(Kernel, TreeKernel, CompositeKernel.ComboOperator, double, CompositeKernel.Normalize) - Constructor for class org.cleartk.ml.tksvmlight.model.CompositeKernel
CompositeKernel.ComboOperator - Enum in org.cleartk.ml.tksvmlight.model
CompositeKernel.Normalize - Enum in org.cleartk.ml.tksvmlight.model
CompressedStringBiMap - Class in org.cleartk.util.collection: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
CompressedStringBiMap() - Constructor for class org.cleartk.util.collection.CompressedStringBiMap
computeCentroid(Iterable<Instance<OUTCOME_T>>, TfidfExtractor.IDFMap) - Method in class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor
ConfusionMatrix<T extends Comparable<? super T>> - Class in org.cleartk.eval.util: This data structure provides an easy way to build and output a confusion matrix.
ConfusionMatrix() - Constructor for class org.cleartk.eval.util.ConfusionMatrix: Creates an empty confusion Matrix
ConfusionMatrix(ConfusionMatrix<T>) - Constructor for class org.cleartk.eval.util.ConfusionMatrix: Creates a new ConfusionMatrix initialized with the contents of another ConfusionMatrix.
confusions() - Method in class org.cleartk.eval.AnnotationStatistics: Returns the ConfusionMatrix tabulating reference outcomes matched to predicted outcomes.
Conll2003GoldReader - Class in org.cleartk.corpus.conll2003: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Conll2003GoldReader() - Constructor for class org.cleartk.corpus.conll2003.Conll2003GoldReader
Conll2005Constants - Interface in org.cleartk.corpus.conll2005: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
Conll2005GoldAnnotator - Class in org.cleartk.corpus.conll2005: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Conll2005GoldAnnotator() - Constructor for class org.cleartk.corpus.conll2005.Conll2005GoldAnnotator
Conll2005GoldReader - Class in org.cleartk.corpus.conll2005: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Conll2005GoldReader() - Constructor for class org.cleartk.corpus.conll2005.Conll2005GoldReader
Conll2005Writer - Class in org.cleartk.corpus.conll2005: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Conll2005Writer() - Constructor for class org.cleartk.corpus.conll2005.Conll2005Writer
CONLL_2005_VIEW - Static variable in interface org.cleartk.corpus.conll2005.Conll2005Constants: The view containing CoNLL 2005 formatted text.
CONTAINEDBY - Static variable in class org.cleartk.ml.feature.extractor.RelativePositionExtractor
contains(int) - Method in class org.cleartk.corpus.penntreebank.ListSpecification
contains(int) - Method in class org.cleartk.corpus.penntreebank.RangeSpecification
contains(Annotation) - Method in interface org.cleartk.ml.feature.extractor.CleartkExtractor.Bounds: Determines whether or not an annotation lies within the given bounds.
CONTAINS - Static variable in class org.cleartk.ml.feature.extractor.RelativePositionExtractor
contains(Annotation, Annotation) - Static method in class org.cleartk.util.AnnotationUtil
CONTAINS_HYPHEN - Static variable in class org.cleartk.ml.feature.function.ContainsHyphenFeatureFunction: string value contains a hyphen
containsDigits(String) - Static method in class org.cleartk.ml.feature.util.NumericTypeUtil
containsHyphen(String) - Static method in class org.cleartk.ml.feature.util.HyphenUtil
ContainsHyphenFeatureFunction - Class in org.cleartk.ml.feature.function: Copyright (c) 2007-2012, Regents of the University of Colorado
All rights reserved.
ContainsHyphenFeatureFunction() - Constructor for class org.cleartk.ml.feature.function.ContainsHyphenFeatureFunction
contextExtractors - Variable in class org.cleartk.timeml.event.EventAnnotator
contextExtractors - Variable in class org.cleartk.timeml.event.EventAttributeAnnotator: The list of feature extractors that will be applied to the Event annotation, with a Sentence window.
ContextValues - Class in org.cleartk.ml.opennlp.maxent.encoder: A class that holds the String[] and float[] that represent features in OpenNLP Maxent.
ContextValues(String[], float[]) - Constructor for class org.cleartk.ml.opennlp.maxent.encoder.ContextValues
ContextValuesFeaturesEncoder - Class in org.cleartk.ml.opennlp.maxent.encoder: A class that converts ClearTK Features to the String[] and float[] needed by OpenNLP Maxent.
ContextValuesFeaturesEncoder() - Constructor for class org.cleartk.ml.opennlp.maxent.encoder.ContextValuesFeaturesEncoder
convert(TopTreebankNode, JCas, boolean) - Static method in class org.cleartk.corpus.penntreebank.TreebankNodeConverter
convert(TreebankNode, JCas, TreebankNode, TreebankNode, boolean) - Static method in class org.cleartk.corpus.penntreebank.TreebankNodeConverter
convert(JCas, TopTreebankNode, Sentence) - Method in class org.cleartk.corpus.propbank.util.Propbank: Convert to ClearTK Predicate / SemanticArgument annotations and add them to view.
convert(JCas, TopTreebankNode) - Method in class org.cleartk.corpus.propbank.util.PropbankCorefRelation: This is not implemented for PropbankCorefRelation and will always throw UnsupportedOperationException.
convert(JCas, TopTreebankNode) - Method in class org.cleartk.corpus.propbank.util.PropbankNodeRelation
convert(JCas, TopTreebankNode) - Method in class org.cleartk.corpus.propbank.util.PropbankRelation: Convert to an appropriate ClearTK annotation and add it to jCas if necessary.
convert(JCas, TopTreebankNode) - Method in class org.cleartk.corpus.propbank.util.PropbankSplitRelation
convert(JCas, TopTreebankNode) - Method in class org.cleartk.corpus.propbank.util.PropbankTerminalRelation
convert(JCas, TopTreebankNode) - Method in class org.cleartk.corpus.propbank.util.Proplabel: Convert to ClearTK SemanticArgument annotation and add it to view.
convertBase(int, int) - Static method in class org.cleartk.util.BaseConversion
convertToLIBSVM(FeatureVector) - Static method in class org.cleartk.ml.libsvm.LibSvmClassifier
copyAttributes(Element, Annotation, JCas) - Static method in class org.cleartk.corpus.timeml.TimeMlUtil
corefRelations - Variable in class org.cleartk.corpus.propbank.util.PropbankCorefRelation
CosineSimilarity - Class in org.cleartk.ml.feature.transform.extractor: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
CosineSimilarity() - Constructor for class org.cleartk.ml.feature.transform.extractor.CosineSimilarity
countCorrectOutcomes() - Method in class org.cleartk.eval.AnnotationStatistics
countCorrectOutcomes(OUTCOME_TYPE) - Method in class org.cleartk.eval.AnnotationStatistics
countedValue - Variable in class org.cleartk.ml.feature.extractor.CleartkExtractor.NestedCountFeature
countFalseNegatives(OUTCOME_TYPE...) - Method in class org.cleartk.eval.AnnotationStatistics
countFalsePositives(OUTCOME_TYPE...) - Method in class org.cleartk.eval.AnnotationStatistics
countFiles(Iterator<File>) - Method in class org.cleartk.util.cr.FilesCollectionReader
countPredictedOutcomes() - Method in class org.cleartk.eval.AnnotationStatistics
countPredictedOutcomes(OUTCOME_TYPE) - Method in class org.cleartk.eval.AnnotationStatistics
countReferenceOutcomes() - Method in class org.cleartk.eval.AnnotationStatistics
countReferenceOutcomes(OUTCOME_TYPE) - Method in class org.cleartk.eval.AnnotationStatistics
Counts - Class in org.cleartk.ml.feature: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
Counts(String, String, Map<? extends Object, Integer>) - Constructor for class org.cleartk.ml.feature.Counts
Counts(String, Map<? extends Object, Integer>) - Constructor for class org.cleartk.ml.feature.Counts
countTrueNegatives(OUTCOME_TYPE...) - Method in class org.cleartk.eval.AnnotationStatistics
countTruePositives(OUTCOME_TYPE...) - Method in class org.cleartk.eval.AnnotationStatistics
CoveredTextAnnotationWriter - Class in org.cleartk.util.ae.linewriter.annotation: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
CoveredTextAnnotationWriter() - Constructor for class org.cleartk.util.ae.linewriter.annotation.CoveredTextAnnotationWriter
CoveredTextExtractor<T extends Annotation> - Class in org.cleartk.ml.feature.extractor: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
CoveredTextExtractor() - Constructor for class org.cleartk.ml.feature.extractor.CoveredTextExtractor
createArgument(JCas, Token, String) - Method in class org.cleartk.clearnlp.CleartkSemanticRoleOps
createArgument(JCas, ARGUMENT_SPAN_TYPE, String) - Method in interface org.cleartk.clearnlp.SemanticRoleOps
createChunks(JCas, List<SUB_CHUNK_TYPE>, List<OUTCOME_TYPE>) - Method in interface org.cleartk.ml.chunking.Chunking
createChunks(JCas, List<SUB_CHUNK_TYPE>, List<String>) - Method in class org.cleartk.ml.chunking.Chunking_ImplBase
createClassifier() - Method in interface org.cleartk.ml.ClassifierFactory
createClassifier() - Method in class org.cleartk.ml.jar.GenericJarClassifierFactory
createClassifier() - Method in interface org.cleartk.ml.SequenceClassifierFactory
createDataWriter() - Method in interface org.cleartk.ml.DataWriterFactory
createDataWriter() - Method in class org.cleartk.ml.jar.DefaultDataWriterFactory
createDataWriter() - Method in class org.cleartk.ml.jar.DefaultSequenceDataWriterFactory
createDataWriter(String, Class<T>) - Method in class org.cleartk.ml.jar.GenericDataWriterFactory
createDataWriter() - Method in interface org.cleartk.ml.SequenceDataWriterFactory
createDataWriter() - Method in class org.cleartk.ml.util.PublicFieldDataWriter.BooleanFactory
createDataWriter() - Method in class org.cleartk.ml.util.PublicFieldDataWriter.StringFactory
createDataWriter() - Method in class org.cleartk.ml.util.PublicFieldSequenceDataWriter.BooleanFactory
createDataWriter() - Method in class org.cleartk.ml.util.PublicFieldSequenceDataWriter.StringFactory
createDataWriter() - Method in class org.cleartk.ml.viterbi.ViterbiDataWriterFactory
createDocumentClassificationAggregate(File, DocumentClassificationEvaluation.AnnotatorMode) - Static method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation: Creates the aggregate builder for the document classification pipeline
createExtractor() - Static method in class org.cleartk.ml.feature.function.CharacterCategoryPatternFunction
createExtractor(CharacterCategoryPatternFunction.PatternType) - Static method in class org.cleartk.ml.feature.function.CharacterCategoryPatternFunction
createFeature(String, Feature) - Static method in class org.cleartk.ml.Feature
createFileIterator() - Method in class org.cleartk.util.cr.FilesCollectionReader
createIdfCentroidSimilarityDataURI(File) - Static method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
createIdfMap(Iterable<Instance<OUTCOME_T>>) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor
createInstance(T, Object...) - Static method in class org.cleartk.ml.util.InstanceFactory
createInstance(T, String) - Static method in class org.cleartk.ml.util.InstanceFactory
createInstanceList(File) - Method in class org.cleartk.ml.mallet.InstanceListCreator
createMinMaxDataURI(File) - Static method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
createName(String...) - Static method in class org.cleartk.ml.Feature
createName(String, String) - Static method in class org.cleartk.ml.feature.extractor.TypePathExtractor: WARNING: this method is public for TypePathFeature backwards compatibility, but should not be used by anyone else!
createNode(JCas, Token) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
createNode(JCas, NODE_SPAN_TYPE) - Method in interface org.cleartk.clearnlp.DependencyOps: Creates a new dependency node for the specified span
createOutcomes(JCas, List<SUB_CHUNK_TYPE>, List<CHUNK_TYPE>) - Method in interface org.cleartk.ml.chunking.Chunking
createOutcomes(JCas, List<SUB_CHUNK_TYPE>, List<CHUNK_TYPE>) - Method in class org.cleartk.ml.chunking.Chunking_ImplBase
createPennTokenizer() - Static method in class org.cleartk.token.TokenComponents
createPredicate(JCas, Token, String) - Method in class org.cleartk.clearnlp.CleartkSemanticRoleOps
createPredicate(JCas, PREDICATE_SPAN_TYPE, String) - Method in interface org.cleartk.clearnlp.SemanticRoleOps
createPreprocessingAggregate(File, DocumentClassificationEvaluation.AnnotatorMode) - Static method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation: Creates the preprocessing pipeline needed for document classification.
createRelation(JCas, DependencyNode, DependencyNode, String) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
createRelation(JCas, NODE_TYPE, NODE_TYPE, String) - Method in interface org.cleartk.clearnlp.DependencyOps: Creates a relation between the two nodes.
createRootNode(JCas, Sentence) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
createRootNode(JCas, ROOT_NODE_SPAN_TYPE) - Method in interface org.cleartk.clearnlp.DependencyOps
createSentenceAnnotator(Locale) - Static method in class org.cleartk.token.breakit.BreakIteratorAnnotatorFactory
createString(TreeFeatureVector) - Static method in class org.cleartk.ml.tksvmlight.TreeKernelSvmBooleanOutcomeDataWriter: creates and formats a string (without the outcome) for a specific feature vector.
createSubtokenizer() - Static method in class org.cleartk.token.TokenComponents
createTestEnabledMessage(String, String) - Static method in class org.cleartk.test.util.CleartkTestBase: Subclasses should call this method to create a message that explains how to disable a test.
createToken(JCas, int, int) - Method in class org.cleartk.clearnlp.CleartkTokenOps
createToken(JCas, int, int) - Method in interface org.cleartk.clearnlp.TokenOps
createTokenAnnotator(Locale) - Static method in class org.cleartk.token.breakit.BreakIteratorAnnotatorFactory
createTokenTfIdfDataURI(File) - Static method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
createTrainer(String...) - Method in class org.cleartk.ml.mallet.factory.C45TrainerFactory
createTrainer(String...) - Method in interface org.cleartk.ml.mallet.factory.ClassifierTrainerFactory
createTrainer(String...) - Method in class org.cleartk.ml.mallet.factory.MaxEntTrainerFactory
createTrainer(String...) - Method in class org.cleartk.ml.mallet.factory.McMaxEntTrainerFactory
createTrainer(String...) - Method in class org.cleartk.ml.mallet.factory.NaiveBayesTrainerFactory
createZmusDataURI(File) - Static method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
CrfSuiteStringOutcomeClassifier - Class in org.cleartk.ml.crfsuite: Copyright (c) 2011-2012, Technische Universität Darmstadt
All rights reserved.
CrfSuiteStringOutcomeClassifier(FeaturesEncoder<List<NameNumber>>, OutcomeEncoder<String, String>, File) - Constructor for class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeClassifier
CrfSuiteStringOutcomeClassifierBuilder - Class in org.cleartk.ml.crfsuite: Copyright (c) 2011-2012, Technische Universität Darmstadt
All rights reserved.
CrfSuiteStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeClassifierBuilder
CrfSuiteStringOutcomeDataWriter - Class in org.cleartk.ml.crfsuite: Copyright (c) 2011-2012, Technische Universität Darmstadt
All rights reserved.
CrfSuiteStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeDataWriter
CrfSuiteWrapper - Class in org.cleartk.ml.crfsuite: Copyright (c) 2011-2012, Technische Universität Darmstadt
All rights reserved.
CrfSuiteWrapper() - Constructor for class org.cleartk.ml.crfsuite.CrfSuiteWrapper
crossValidation(List<ITEM_TYPE>, int) - Method in class org.cleartk.eval.Evaluation_ImplBase: Run a cross-validation.
currentFile - Variable in class org.cleartk.util.cr.FilesCollectionReader
CustomCompositeKernel - Class in org.cleartk.ml.libsvm.tk: A class that provided interfaces to train, package and unpackage a TreeKernelSvmBooleanOutcomeClassifier into a jar file.
CustomCompositeKernel(Kernel, TreeKernel, CompositeKernel.ComboOperator, double, CompositeKernel.Normalize) - Constructor for class org.cleartk.ml.libsvm.tk.CustomCompositeKernel

D

dashPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
dashRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
dataDirectories - Variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
dataWriter - Variable in class org.cleartk.ml.CleartkAnnotator
dataWriter - Variable in class org.cleartk.ml.CleartkSequenceAnnotator
DataWriter<OUTCOME_TYPE> - Interface in org.cleartk.ml: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
DataWriter_ImplBase<CLASSIFIER_BUILDER_TYPE extends EncodingJarClassifierBuilder<? extends Classifier<OUTCOME_TYPE>,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for DataWriter implementations that write training data to a file using FeaturesEncoders and OutcomeEncoders.
DataWriter_ImplBase(File) - Constructor for class org.cleartk.ml.jar.DataWriter_ImplBase
DataWriterFactory<OUTCOME_TYPE> - Interface in org.cleartk.ml: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
dataWriterFactory - Variable in class org.cleartk.ml.multi.CleartkMultiAnnotator
DataWriterFactory_ImplBase<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for DataWriterFactory implementations that use FeaturesEncoders and OutcomeEncoders.
DataWriterFactory_ImplBase() - Constructor for class org.cleartk.ml.jar.DataWriterFactory_ImplBase
dataWriters - Variable in class org.cleartk.ml.multi.CleartkMultiAnnotator
DCT_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
decode(Boolean) - Method in class org.cleartk.ml.encoder.outcome.BooleanToBooleanOutcomeEncoder
decode(Integer) - Method in class org.cleartk.ml.encoder.outcome.BooleanToSignOutcomeEncoder
decode(String) - Method in class org.cleartk.ml.encoder.outcome.BooleanToStringOutcomeEncoder
decode(Double) - Method in class org.cleartk.ml.encoder.outcome.DoubleToDoubleOutcomeEncoder
decode(ENCODED_OUTCOME_TYPE) - Method in interface org.cleartk.ml.encoder.outcome.OutcomeEncoder
decode(String[]) - Method in class org.cleartk.ml.encoder.outcome.StringArrayToStringArrayEncoder
decode(Integer) - Method in class org.cleartk.ml.encoder.outcome.StringToIntegerOutcomeEncoder
decode(String) - Method in class org.cleartk.ml.encoder.outcome.StringToStringOutcomeEncoder
decodePrediction(double) - Method in class org.cleartk.ml.libsvm.LibSvmBooleanOutcomeClassifier
decodePrediction(double) - Method in class org.cleartk.ml.libsvm.LibSvmClassifier
decodePrediction(double) - Method in class org.cleartk.ml.libsvm.LibSvmStringOutcomeClassifier
DEFAULT_ADVANCE_PERCENTAGE - Static variable in class org.cleartk.opennlp.tools.ParserAnnotator
DEFAULT_BEAM_SIZE - Static variable in class org.cleartk.opennlp.tools.ParserAnnotator
DEFAULT_DICTIONARY_FILE_NAME - Static variable in class org.cleartk.clearnlp.MpAnalyzer
DEFAULT_DICTIONARY_FILE_NAME - Static variable in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
DEFAULT_DICTIONARY_FILE_NAME - Static variable in class org.cleartk.clearnlp.Tokenizer_ImplBase
DEFAULT_MODEL_PATH - Static variable in class org.cleartk.clearnlp.DependencyParser_ImplBase
DEFAULT_MODEL_PATH - Static variable in class org.cleartk.clearnlp.PosTagger_ImplBase
DEFAULT_NAME - Static variable in class org.cleartk.ml.feature.function.CapitalTypeFeatureFunction
DEFAULT_NAME - Static variable in class org.cleartk.ml.feature.function.ContainsHyphenFeatureFunction
DEFAULT_NAME - Static variable in class org.cleartk.ml.feature.function.LowerCaseFeatureFunction
DEFAULT_NAME - Static variable in class org.cleartk.ml.feature.function.NumericTypeFeatureFunction
DEFAULT_OUTPUT_DIRECTORY - Static variable in class org.cleartk.examples.pos.ExamplePosAnnotator
DEFAULT_OUTPUT_DIRECTORY - Static variable in class org.cleartk.examples.pos.ExamplePosPlainTextWriter
DEFAULT_PARSER_MODEL_PATH - Static variable in class org.cleartk.opennlp.tools.ParserAnnotator
DEFAULT_PRED_ID_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
DEFAULT_RESOURCE_BUNDLE - Static variable in exception org.cleartk.ml.CleartkProcessingException
DEFAULT_ROLESET_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
DEFAULT_SRL_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
DefaultDataWriterFactory<OUTCOME_TYPE> - Class in org.cleartk.ml.jar: A DataWriterFactory that creates a data writer from the class given by DefaultDataWriterFactory.PARAM_DATA_WRITER_CLASS_NAME and the directory given by DirectoryDataWriterFactory.PARAM_OUTPUT_DIRECTORY.
DefaultDataWriterFactory() - Constructor for class org.cleartk.ml.jar.DefaultDataWriterFactory
DefaultFeatureExtractor - Class in org.cleartk.token.pos.impl: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
DefaultFeatureExtractor() - Constructor for class org.cleartk.token.pos.impl.DefaultFeatureExtractor
DefaultInputTypesHelper - Class in org.cleartk.berkeleyparser: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
DefaultInputTypesHelper() - Constructor for class org.cleartk.berkeleyparser.DefaultInputTypesHelper
DefaultInputTypesHelper - Class in org.cleartk.opennlp.tools.parser: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
DefaultInputTypesHelper() - Constructor for class org.cleartk.opennlp.tools.parser.DefaultInputTypesHelper
DefaultLineHandler - Class in org.cleartk.util.cr.linereader: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
DefaultLineHandler() - Constructor for class org.cleartk.util.cr.linereader.DefaultLineHandler
DefaultOutcomeFeatureExtractor - Class in org.cleartk.ml.viterbi: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
DefaultOutcomeFeatureExtractor() - Constructor for class org.cleartk.ml.viterbi.DefaultOutcomeFeatureExtractor
DefaultOutputTypesHelper<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation> - Class in org.cleartk.berkeleyparser: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
DefaultOutputTypesHelper() - Constructor for class org.cleartk.berkeleyparser.DefaultOutputTypesHelper
DefaultOutputTypesHelper<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation> - Class in org.cleartk.opennlp.tools.parser: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
DefaultOutputTypesHelper() - Constructor for class org.cleartk.opennlp.tools.parser.DefaultOutputTypesHelper
DefaultOutputTypesHelper.TokenIndex - Class in org.cleartk.berkeleyparser
DefaultOutputTypesHelper.TokenIndex() - Constructor for class org.cleartk.berkeleyparser.DefaultOutputTypesHelper.TokenIndex
DefaultPosAnnotator - Class in org.cleartk.token.pos.impl: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
DefaultPosAnnotator() - Constructor for class org.cleartk.token.pos.impl.DefaultPosAnnotator
DefaultSequenceDataWriterFactory<OUTCOME_TYPE> - Class in org.cleartk.ml.jar: A SequenceDataWriterFactory that creates a data writer from the class given by DefaultSequenceDataWriterFactory.PARAM_DATA_WRITER_CLASS_NAME and the directory given by DirectoryDataWriterFactory.PARAM_OUTPUT_DIRECTORY.
DefaultSequenceDataWriterFactory() - Constructor for class org.cleartk.ml.jar.DefaultSequenceDataWriterFactory
DefaultSnowballStemmer - Class in org.cleartk.snowball: This class borrows from SnowballFilter
Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
DefaultSnowballStemmer() - Constructor for class org.cleartk.snowball.DefaultSnowballStemmer
DefaultTestBase - Class in org.cleartk.test.util: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
DefaultTestBase() - Constructor for class org.cleartk.test.util.DefaultTestBase
delegate() - Method in class org.cleartk.util.collection.CompressedStringBiMap
delegatedClassifier - Variable in class org.cleartk.ml.viterbi.ViterbiClassifier
delegatedDataWriter - Variable in class org.cleartk.ml.viterbi.ViterbiDataWriter
delegatedDataWriterFactoryClass - Variable in class org.cleartk.ml.viterbi.ViterbiDataWriterFactory
DependencyOps<NODE_TYPE extends TOP,NODE_SPAN_TYPE extends Annotation,ROOT_NODE_TYPE extends NODE_TYPE,ROOT_NODE_SPAN_TYPE extends Annotation,RELATION_TYPE extends TOP> - Interface in org.cleartk.clearnlp: Defines common set of dependency graph data type operations used to convert to and query in the target type system
DependencyParser - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
DependencyParser() - Constructor for class org.cleartk.clearnlp.DependencyParser
DependencyParser_ImplBase<WINDOW_TYPE extends Annotation,TOKEN_TYPE extends Annotation,DEPENDENCY_NODE_TYPE extends TOP,DEPENDENCY_ROOT_NODE_TYPE extends DEPENDENCY_NODE_TYPE,DEPENDENCY_RELATION_TYPE extends TOP> - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
DependencyParser_ImplBase(TokenOps<TOKEN_TYPE>, DependencyOps<DEPENDENCY_NODE_TYPE, TOKEN_TYPE, DEPENDENCY_ROOT_NODE_TYPE, WINDOW_TYPE, DEPENDENCY_RELATION_TYPE>) - Constructor for class org.cleartk.clearnlp.DependencyParser_ImplBase
DescriptorTestUtil - Class in org.cleartk.test.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
DescriptorTestUtil() - Constructor for class org.cleartk.test.util.DescriptorTestUtil
digitsPattern - Static variable in class org.cleartk.ml.feature.util.NumericTypeUtil
DirectedDistanceExtractor<T extends Annotation,U extends Annotation> - Class in org.cleartk.ml.feature.extractor: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
DirectedDistanceExtractor(String, Class<? extends Annotation>) - Constructor for class org.cleartk.ml.feature.extractor.DirectedDistanceExtractor
directory - Variable in class org.cleartk.corpus.penntreebank.PennTreebankReader
DirectoryDataWriter<CLASSIFIER_BUILDER extends JarClassifierBuilder<? extends CLASSIFIER_TYPE>,CLASSIFIER_TYPE> - Class in org.cleartk.ml.jar: Superclass for DataWriter and SequenceDataWriter implementations that saves files to a training directory using a JarClassifierBuilder.
DirectoryDataWriter(File) - Constructor for class org.cleartk.ml.jar.DirectoryDataWriter
DirectoryDataWriterFactory - Class in org.cleartk.ml.jar: Superclass for DataWriterFactory and SequenceDataWriterFactory implementations that use FeaturesEncoders and OutcomeEncoders.
DirectoryDataWriterFactory() - Constructor for class org.cleartk.ml.jar.DirectoryDataWriterFactory
displayText() - Method in class org.cleartk.corpus.propbank.util.Propbank: Generate an easily readable multi-line description of this Propbank entry.
displayText() - Method in class org.cleartk.util.treebank.TreebankNode
distance(Map<String, Double>, Map<String, Double>) - Method in class org.cleartk.ml.feature.transform.extractor.CosineSimilarity
distance(Map<String, Double>) - Method in class org.cleartk.ml.feature.transform.extractor.FixedCosineSimilarity
distance(Map<String, Double>, Map<String, Double>) - Method in class org.cleartk.ml.feature.transform.extractor.FixedCosineSimilarity
distance(Map<String, Double>, Map<String, Double>) - Method in interface org.cleartk.ml.feature.transform.extractor.SimilarityFunction
DistanceExtractor<T extends Annotation,U extends Annotation> - Class in org.cleartk.ml.feature.extractor: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
DistanceExtractor(String, Class<? extends Annotation>) - Constructor for class org.cleartk.ml.feature.extractor.DistanceExtractor
Docs2Sentences - Class in org.cleartk.examples.linewriter: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
Docs2Sentences() - Constructor for class org.cleartk.examples.linewriter.Docs2Sentences
Docs2Sentences.Options - Interface in org.cleartk.examples.linewriter
Docs2Tokens - Class in org.cleartk.examples.linewriter: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
Docs2Tokens() - Constructor for class org.cleartk.examples.linewriter.Docs2Tokens
Docs2Tokens.Options - Interface in org.cleartk.examples.linewriter
Docs2Tokens.TokenAnnotationWriter - Class in org.cleartk.examples.linewriter
Docs2Tokens.TokenAnnotationWriter() - Constructor for class org.cleartk.examples.linewriter.Docs2Tokens.TokenAnnotationWriter
DOCSTART - Static variable in class org.cleartk.corpus.conll2003.Conll2003GoldReader
DocumentClassificationAnnotator - Class in org.cleartk.examples.documentclassification.advanced: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
DocumentClassificationAnnotator() - Constructor for class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
DocumentClassificationAnnotator.CountAnnotationExtractor<T extends Annotation> - Class in org.cleartk.examples.documentclassification.advanced
DocumentClassificationAnnotator.CountAnnotationExtractor(Class<? extends Annotation>) - Constructor for class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator.CountAnnotationExtractor
DocumentClassificationEvaluation - Class in org.cleartk.examples.documentclassification.advanced: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
DocumentClassificationEvaluation(File) - Constructor for class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation
DocumentClassificationEvaluation(File, List<String>) - Constructor for class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation
DocumentClassificationEvaluation.AnnotatorMode - Enum in org.cleartk.examples.documentclassification.advanced
DocumentClassificationEvaluation.Options - Interface in org.cleartk.examples.documentclassification.advanced
DocumentIdBlockWriter - Class in org.cleartk.util.ae.linewriter.block: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
DocumentIdBlockWriter() - Constructor for class org.cleartk.util.ae.linewriter.block.DocumentIdBlockWriter
dollarSignPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
dollarSignRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
DoNothingBlockWriter - Class in org.cleartk.util.ae.linewriter.block: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
DoNothingBlockWriter() - Constructor for class org.cleartk.util.ae.linewriter.block.DoNothingBlockWriter
dotProduct(Map<String, Double>, Map<String, Double>) - Static method in class org.cleartk.ml.feature.transform.extractor.CosineSimilarity
doubleQuotePattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
doubleQuoteRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
DoubleToDoubleOutcomeEncoder - Class in org.cleartk.ml.encoder.outcome: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
DoubleToDoubleOutcomeEncoder() - Constructor for class org.cleartk.ml.encoder.outcome.DoubleToDoubleOutcomeEncoder
DOWN_SEPARATOR - Variable in class org.cleartk.feature.syntax.SyntacticPathExtractor

E

editDistance(String, String) - Static method in class org.cleartk.util.similarity.Levenshtein
ellipsisPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
ellipsisRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
encode(Feature) - Method in class org.cleartk.ml.encoder.features.BagEncoder
encode(Feature) - Method in class org.cleartk.ml.encoder.features.BooleanEncoder
encode(Feature) - Method in class org.cleartk.ml.encoder.features.FeatureCollectionEncoder
encode(Feature) - Method in interface org.cleartk.ml.encoder.features.FeatureEncoder
encode(Feature) - Method in class org.cleartk.ml.encoder.features.FeatureEncoderChain
encode(Feature) - Method in class org.cleartk.ml.encoder.features.MultiBagEncoder
encode(Feature) - Method in class org.cleartk.ml.encoder.features.NumberEncoder
encode(Feature) - Method in class org.cleartk.ml.encoder.features.StringEncoder
encode(Boolean) - Method in class org.cleartk.ml.encoder.outcome.BooleanToBooleanOutcomeEncoder
encode(Boolean) - Method in class org.cleartk.ml.encoder.outcome.BooleanToSignOutcomeEncoder
encode(Boolean) - Method in class org.cleartk.ml.encoder.outcome.BooleanToStringOutcomeEncoder
encode(Double) - Method in class org.cleartk.ml.encoder.outcome.DoubleToDoubleOutcomeEncoder
encode(OUTCOME_TYPE) - Method in interface org.cleartk.ml.encoder.outcome.OutcomeEncoder
encode(String[]) - Method in class org.cleartk.ml.encoder.outcome.StringArrayToStringArrayEncoder
encode(String) - Method in class org.cleartk.ml.encoder.outcome.StringToIntegerOutcomeEncoder
encode(String) - Method in class org.cleartk.ml.encoder.outcome.StringToStringOutcomeEncoder
encode(Boolean) - Method in class org.cleartk.ml.libsvm.LibSvmBooleanOutcomeDataWriter
encode(ENCODED_OUTCOME_TYPE) - Method in class org.cleartk.ml.libsvm.LibSvmDataWriter
encode(Integer) - Method in class org.cleartk.ml.libsvm.LibSvmStringOutcomeDataWriter
encodeAll(Iterable<Feature>) - Method in interface org.cleartk.ml.encoder.features.FeaturesEncoder
encodeAll(Iterable<Feature>) - Method in class org.cleartk.ml.encoder.features.FeatureVectorFeaturesEncoder
encodeAll(Iterable<Feature>) - Method in class org.cleartk.ml.encoder.features.NameNumberFeaturesEncoder
encodeAll(Iterable<Feature>) - Method in class org.cleartk.ml.liblinear.encoder.FeatureNodeArrayEncoder
encodeAll(Iterable<Feature>) - Method in class org.cleartk.ml.opennlp.maxent.encoder.ContextValuesFeaturesEncoder
encodeAll(Iterable<Feature>) - Method in class org.cleartk.ml.tksvmlight.TreeFeatureVectorFeaturesEncoder
encodeAll(Iterable<Feature>) - Method in class org.cleartk.ml.weka.WekaFeaturesEncoder
ENCODERS_FILE_NAME - Static variable in class org.cleartk.ml.encoder.features.FeaturesEncoder_ImplBase
encodes(Feature) - Method in class org.cleartk.ml.encoder.features.BagEncoder
encodes(Feature) - Method in class org.cleartk.ml.encoder.features.BooleanEncoder
encodes(Feature) - Method in class org.cleartk.ml.encoder.features.FeatureCollectionEncoder
encodes(Feature) - Method in interface org.cleartk.ml.encoder.features.FeatureEncoder
encodes(Feature) - Method in class org.cleartk.ml.encoder.features.FeatureEncoderChain
encodes(Feature) - Method in class org.cleartk.ml.encoder.features.MultiBagEncoder
encodes(Feature) - Method in class org.cleartk.ml.encoder.features.NumberEncoder
encodes(Feature) - Method in class org.cleartk.ml.encoder.features.StringEncoder
EncodingDirectoryDataWriter<CLASSIFIER_BUILDER_TYPE extends EncodingJarClassifierBuilder<? extends CLASSIFIER_TYPE,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>,CLASSIFIER_TYPE,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for DataWriter and SequenceDataWriter implementations that write training data to a file using a classifier builder with FeaturesEncoders and OutcomeEncoders Note that it does not declare that it implements either of the DataWriter interfaces.
EncodingDirectoryDataWriter(File) - Constructor for class org.cleartk.ml.jar.EncodingDirectoryDataWriter
EncodingDirectoryDataWriterFactory<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for DataWriterFactory and SequenceDataWriterFactory implementations that use FeaturesEncoders and OutcomeEncoders.
EncodingDirectoryDataWriterFactory() - Constructor for class org.cleartk.ml.jar.EncodingDirectoryDataWriterFactory
EncodingJarClassifier<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for Classifier and SequenceClassifier implementations that use FeaturesEncoders and OutcomeEncoders.
EncodingJarClassifier(FeaturesEncoder<ENCODED_FEATURES_TYPE>, OutcomeEncoder<OUTCOME_TYPE, ENCODED_OUTCOME_TYPE>) - Constructor for class org.cleartk.ml.jar.EncodingJarClassifier
EncodingJarClassifierBuilder<CLASSIFIER_TYPE,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for builders which write to a training data file using FeaturesEncoders and OutcomeEncoders, and package classifiers as jar files.
EncodingJarClassifierBuilder() - Constructor for class org.cleartk.ml.jar.EncodingJarClassifierBuilder
ENGMALT_RESOURCE_NAME - Static variable in class org.cleartk.maltparser.MaltParser
equals(Object) - Method in class org.cleartk.ml.Feature
EQUALS - Static variable in class org.cleartk.ml.feature.extractor.RelativePositionExtractor
equals(Object) - Method in class org.cleartk.ml.Instance
equals(Object) - Method in class org.cleartk.ml.util.featurevector.FeatureVector.Entry
equals(Object) - Method in class org.cleartk.ml.util.featurevector.FeatureVector
equals(Object) - Method in class org.cleartk.token.tokenizer.Token
escape(String) - Static method in class org.cleartk.ml.encoder.FeatureEncoderUtil
escape(String, char[]) - Static method in class org.cleartk.ml.encoder.FeatureEncoderUtil
EuclidianNormalizer - Class in org.cleartk.ml.encoder.features.normalizer: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
EuclidianNormalizer() - Constructor for class org.cleartk.ml.encoder.features.normalizer.EuclidianNormalizer
evaluate(svm_node<TreeFeatureVector>, svm_node<TreeFeatureVector>) - Method in class org.cleartk.ml.libsvm.tk.CustomCompositeKernel
evaluate(double) - Method in class org.cleartk.ml.sigmoid.Sigmoid
evaluate(FeatureVector, FeatureVector) - Method in class org.cleartk.ml.svmlight.model.Kernel
evaluate(FeatureVector, FeatureVector) - Method in class org.cleartk.ml.svmlight.model.LinearKernel
evaluate(FeatureVector, FeatureVector) - Method in class org.cleartk.ml.svmlight.model.PolynomialKernel
evaluate(FeatureVector, FeatureVector) - Method in class org.cleartk.ml.svmlight.model.RbfKernel
evaluate(FeatureVector, FeatureVector) - Method in class org.cleartk.ml.svmlight.model.SigmoidKernel
evaluate(FeatureVector) - Method in class org.cleartk.ml.svmlight.model.SvmLightModel
evaluate(TreeFeatureVector, TreeFeatureVector) - Method in class org.cleartk.ml.tksvmlight.model.CompositeKernel
evaluate(TreeFeatureVector, TreeFeatureVector) - Method in class org.cleartk.ml.tksvmlight.model.TreeKernel
evaluate(TreeFeatureVector) - Method in class org.cleartk.ml.tksvmlight.model.TreeKernelSvmModel
EvaluateNamedEntityChunker - Class in org.cleartk.examples.chunking: This class can be used to train and test the named entity chunker.
EvaluateNamedEntityChunker(File) - Constructor for class org.cleartk.examples.chunking.EvaluateNamedEntityChunker
EvaluateNamedEntityChunker.Options - Interface in org.cleartk.examples.chunking
Evaluation_ImplBase<ITEM_TYPE,STATS_TYPE> - Class in org.cleartk.eval: A base class for training, testing and cross-validation of models.
Evaluation_ImplBase(File) - Constructor for class org.cleartk.eval.Evaluation_ImplBase: Create an evaluation that will write all auxiliary files to the given directory.
EvaluationConstants - Interface in org.cleartk.eval: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
EVENT_ATTRIBUTES_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
EVENT_EXTENTS_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
EventAnnotator - Class in org.cleartk.timeml.event: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
EventAnnotator() - Constructor for class org.cleartk.timeml.event.EventAnnotator
EventAspectAnnotator - Class in org.cleartk.timeml.event: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
EventAspectAnnotator() - Constructor for class org.cleartk.timeml.event.EventAspectAnnotator
EventAttributeAnnotator<OUTCOME_TYPE> - Class in org.cleartk.timeml.event: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
EventAttributeAnnotator() - Constructor for class org.cleartk.timeml.event.EventAttributeAnnotator
EventClassAnnotator - Class in org.cleartk.timeml.event: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
EventClassAnnotator() - Constructor for class org.cleartk.timeml.event.EventClassAnnotator
eventFeatureExtractors - Variable in class org.cleartk.timeml.event.EventAttributeAnnotator: The list of feature extractors that will be applied directly to the Event annotation.
EventModalityAnnotator - Class in org.cleartk.timeml.event: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
EventModalityAnnotator() - Constructor for class org.cleartk.timeml.event.EventModalityAnnotator
EventModelInfo - Class in org.cleartk.timeml.eval: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
EventModelInfo(String, CleartkInternalModelFactory, String[]) - Constructor for class org.cleartk.timeml.eval.EventModelInfo
EventModelInfo(String, CleartkInternalModelFactory) - Constructor for class org.cleartk.timeml.eval.EventModelInfo
EventPolarityAnnotator - Class in org.cleartk.timeml.event: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
EventPolarityAnnotator() - Constructor for class org.cleartk.timeml.event.EventPolarityAnnotator
EventTenseAnnotator - Class in org.cleartk.timeml.event: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
EventTenseAnnotator() - Constructor for class org.cleartk.timeml.event.EventTenseAnnotator
ExamplePosAnnotator - Class in org.cleartk.examples.pos: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
ExamplePosAnnotator() - Constructor for class org.cleartk.examples.pos.ExamplePosAnnotator
ExamplePosPlainTextWriter - Class in org.cleartk.examples.pos: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
ExamplePosPlainTextWriter() - Constructor for class org.cleartk.examples.pos.ExamplePosPlainTextWriter
extract(JCas, Annotation) - Method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator.CountAnnotationExtractor
extract(JCas, T) - Method in class org.cleartk.feature.FilteringExtractor
extract(JCas, TreebankNode) - Method in class org.cleartk.feature.syntax.HeadWordExtractor
extract(JCas, TreebankNode) - Method in class org.cleartk.feature.syntax.ParentExtractor
extract(JCas, TreebankNode) - Method in class org.cleartk.feature.syntax.SiblingExtractor
extract(JCas, TreebankNode) - Method in class org.cleartk.feature.syntax.SubCategorizationExtractor
extract(JCas, T) - Method in class org.cleartk.feature.syntax.SyntacticFirstChildOfGrandparentOfLeafExtractor
extract(JCas, T, U) - Method in class org.cleartk.feature.syntax.SyntacticLeafToLeafPathPartsExtractor
extract(JCas, TreebankNode, TreebankNode) - Method in class org.cleartk.feature.syntax.SyntacticPathExtractor: Extract a string representation of a path feature.
extract(JCas, TreebankNode, TreebankNode) - Method in class org.cleartk.feature.syntax.TargetPathExtractor
extract(JCas, T) - Method in class org.cleartk.feature.TextSliceExtractor
extract(JCas, Token) - Method in class org.cleartk.feature.token.TokenTextForSelectedPosExtractor
extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Bag
extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in interface org.cleartk.ml.feature.extractor.CleartkExtractor.Context: Extracts features in the given context.
extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Count: This method got a bit gnarly in order to support nested Count contexts.
extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Covered
extract(JCas, FOCUS_T) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor
extract(JCas, FOCUS_T, FOCUS_T) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor
extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Focus
extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Ngram
extract(JCas, Annotation, CleartkExtractor.Bounds, Class<SEARCH_T>, FeatureExtractor1<SEARCH_T>) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Ngrams
extract(JCas, T) - Method in class org.cleartk.ml.feature.extractor.CombinedExtractor1: Extract features from the Annotation using the sub-extractors.
extract(JCas, Annotation) - Method in class org.cleartk.ml.feature.extractor.CoveredTextExtractor
extract(JCas, Annotation, Annotation) - Method in class org.cleartk.ml.feature.extractor.DirectedDistanceExtractor
extract(JCas, Annotation, Annotation) - Method in class org.cleartk.ml.feature.extractor.DistanceExtractor
extract(JCas, T) - Method in interface org.cleartk.ml.feature.extractor.FeatureExtractor1: Some feature extractors will require some specific number of annotations that is greater than one.
extract(JCas, T, U) - Method in interface org.cleartk.ml.feature.extractor.FeatureExtractor2
extract(JCas, T) - Method in class org.cleartk.ml.feature.extractor.NamingExtractor1
extract(JCas, T, U) - Method in class org.cleartk.ml.feature.extractor.RelativePositionExtractor
extract(JCas, Annotation) - Method in class org.cleartk.ml.feature.extractor.TypePathExtractor
extract(JCas, Annotation) - Method in class org.cleartk.ml.feature.extractor.WhiteSpaceExtractor
extract(JCas, T) - Method in class org.cleartk.ml.feature.function.FeatureFunctionExtractor
extract(JCas, FOCUS_T) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor
extract(JCas, FOCUS_T) - Method in class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor
extract(JCas, FOCUS_T) - Method in class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor
extract(JCas, FOCUS_T) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor
extract(JCas, FOCUS_T) - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor
extract(JCas, FOCUS_T) - Method in class org.cleartk.summarization.StopwordRemovingExtractor
extract() - Method in class org.cleartk.summarization.SumBasic
extract() - Method in class org.cleartk.summarization.Summarize_ImplBase
extract(JCas, T) - Method in class org.cleartk.timeml.util.TimeWordsExtractor
extractBetween(JCas, FOCUS_T, FOCUS_T) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor
extractFeatures(List<Object>) - Method in class org.cleartk.ml.viterbi.DefaultOutcomeFeatureExtractor
extractFeatures(List<Object>) - Method in interface org.cleartk.ml.viterbi.OutcomeFeatureExtractor
extractFeatures(JCas, Token, Sentence) - Method in class org.cleartk.token.pos.impl.DefaultFeatureExtractor
extractFeatures(JCas, TOKEN_TYPE, SENTENCE_TYPE) - Method in interface org.cleartk.token.pos.PosFeatureExtractor
extractWithin(JCas, FOCUS_T, Annotation) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor: Extract features from the annotations around the focus annotation and within the given bounds.
extraSpacePattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
extraSpaceRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer

F

f(double) - Method in class org.cleartk.eval.AnnotationStatistics
f(double, OUTCOME_TYPE) - Method in class org.cleartk.eval.AnnotationStatistics
f1() - Method in class org.cleartk.eval.AnnotationStatistics
f1(OUTCOME_TYPE) - Method in class org.cleartk.eval.AnnotationStatistics
FACTORY - Static variable in class org.cleartk.timeml.event.EventAnnotator
FACTORY - Static variable in class org.cleartk.timeml.event.EventAspectAnnotator
FACTORY - Static variable in class org.cleartk.timeml.event.EventClassAnnotator
FACTORY - Static variable in class org.cleartk.timeml.event.EventModalityAnnotator
FACTORY - Static variable in class org.cleartk.timeml.event.EventPolarityAnnotator
FACTORY - Static variable in class org.cleartk.timeml.event.EventTenseAnnotator
FACTORY - Static variable in class org.cleartk.timeml.time.TimeAnnotator
FACTORY - Static variable in class org.cleartk.timeml.time.TimeTypeAnnotator
FACTORY - Static variable in class org.cleartk.timeml.tlink.TemporalLinkEventToDocumentCreationTimeAnnotator
FACTORY - Static variable in class org.cleartk.timeml.tlink.TemporalLinkEventToSameSentenceTimeAnnotator
FACTORY - Static variable in class org.cleartk.timeml.tlink.TemporalLinkEventToSubordinatedEventAnnotator
FACTORY - Static variable in class org.cleartk.timeml.tlink.TemporalLinkMainEventToNextSentenceMainEventAnnotator
FACTORY - Static variable in class org.cleartk.timeml.tlink.VerbClauseTemporalAnnotator
feature - Variable in class org.cleartk.corpus.propbank.util.Proplabel
Feature - Class in org.cleartk.ml: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Feature() - Constructor for class org.cleartk.ml.Feature
Feature(Object) - Constructor for class org.cleartk.ml.Feature
Feature(String, Object) - Constructor for class org.cleartk.ml.Feature
FeatureCollection - Class in org.cleartk.ml.feature: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
FeatureCollection(String, Collection<Feature>) - Constructor for class org.cleartk.ml.feature.FeatureCollection
FeatureCollection(Collection<Feature>) - Constructor for class org.cleartk.ml.feature.FeatureCollection
FeatureCollectionEncoder - Class in org.cleartk.ml.encoder.features: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
FeatureCollectionEncoder(String, FeatureEncoder<NameNumber>, NameNumberNormalizer) - Constructor for class org.cleartk.ml.encoder.features.FeatureCollectionEncoder
FeatureCollectionEncoder(FeatureEncoder<NameNumber>, NameNumberNormalizer) - Constructor for class org.cleartk.ml.encoder.features.FeatureCollectionEncoder
FeatureCollectionEncoder(String, FeatureEncoder<NameNumber>) - Constructor for class org.cleartk.ml.encoder.features.FeatureCollectionEncoder
FeatureCollectionEncoder(FeatureEncoder<NameNumber>) - Constructor for class org.cleartk.ml.encoder.features.FeatureCollectionEncoder
FeatureEncoder<T> - Interface in org.cleartk.ml.encoder.features: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
FeatureEncoderChain<ENCODED_TYPE> - Class in org.cleartk.ml.encoder.features: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
FeatureEncoderChain() - Constructor for class org.cleartk.ml.encoder.features.FeatureEncoderChain
featureEncoders - Variable in class org.cleartk.ml.encoder.features.FeatureEncoderChain
FeatureEncoderUtil - Class in org.cleartk.ml.encoder: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
FeatureEncoderUtil() - Constructor for class org.cleartk.ml.encoder.FeatureEncoderUtil
featureExtractor - Variable in class org.cleartk.token.pos.PosAnnotator
FeatureExtractor1<T extends Annotation> - Interface in org.cleartk.ml.feature.extractor: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
FeatureExtractor2<T extends Annotation,U extends Annotation> - Interface in org.cleartk.ml.feature.extractor: Copyright (c) 2007-2009, Regents of the University of Colorado
All rights reserved.
featureFullName - Variable in class org.cleartk.ml.chunking.Chunking_ImplBase
FeatureFunction - Interface in org.cleartk.ml.feature.function: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
FeatureFunctionExtractor<T extends Annotation> - Class in org.cleartk.ml.feature.function: Copyright (c) 2007-2012, Regents of the University of Colorado
All rights reserved.
FeatureFunctionExtractor(FeatureExtractor1<T>, FeatureFunction...) - Constructor for class org.cleartk.ml.feature.function.FeatureFunctionExtractor
FeatureFunctionExtractor(FeatureExtractor1<T>, FeatureFunctionExtractor.BaseFeatures, FeatureFunction...) - Constructor for class org.cleartk.ml.feature.function.FeatureFunctionExtractor
FeatureFunctionExtractor.BaseFeatures - Enum in org.cleartk.ml.feature.function: Specify what to do with the base features created by the passed in feature extractor.
FeatureNodeArrayEncoder - Class in org.cleartk.ml.liblinear.encoder: Copyright (c) 2013, Regents of the University of Colorado
All rights reserved.
FeatureNodeArrayEncoder() - Constructor for class org.cleartk.ml.liblinear.encoder.FeatureNodeArrayEncoder
features - Variable in class org.cleartk.ml.feature.transform.TransformableFeature
FeatureSelectionExtractor<OUTCOME_T> - Class in org.cleartk.ml.feature.selection: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
FeatureSelectionExtractor(String) - Constructor for class org.cleartk.ml.feature.selection.FeatureSelectionExtractor
FeaturesEncoder<ENCODED_FEATURES_TYPE> - Interface in org.cleartk.ml.encoder.features: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
featuresEncoder - Variable in class org.cleartk.ml.jar.EncodingDirectoryDataWriterFactory
featuresEncoder - Variable in class org.cleartk.ml.jar.EncodingJarClassifier
featuresEncoder - Variable in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
FeaturesEncoder_ImplBase<ENCODED_FEATURES_TYPE,ENCODED_FEATURE_TYPE> - Class in org.cleartk.ml.encoder.features: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
FeaturesEncoder_ImplBase() - Constructor for class org.cleartk.ml.encoder.features.FeaturesEncoder_ImplBase
featuresToFeatureMap(List<Feature>) - Method in class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor
featureToAttribute(Feature, int) - Static method in class org.cleartk.ml.weka.WekaFeaturesEncoder
FeatureVector - Class in org.cleartk.ml.util.featurevector: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
FeatureVector() - Constructor for class org.cleartk.ml.util.featurevector.FeatureVector
FeatureVector.Entry - Class in org.cleartk.ml.util.featurevector
FeatureVector.Entry(int, double) - Constructor for class org.cleartk.ml.util.featurevector.FeatureVector.Entry
FeatureVectorFeaturesEncoder - Class in org.cleartk.ml.encoder.features: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
FeatureVectorFeaturesEncoder(int, NameNumberNormalizer) - Constructor for class org.cleartk.ml.encoder.features.FeatureVectorFeaturesEncoder
FeatureVectorFeaturesEncoder(int) - Constructor for class org.cleartk.ml.encoder.features.FeatureVectorFeaturesEncoder
FeatureVectorFeaturesEncoder() - Constructor for class org.cleartk.ml.encoder.features.FeatureVectorFeaturesEncoder
filename - Variable in class org.cleartk.corpus.propbank.util.Propbank
filenameFromString(String) - Static method in class org.cleartk.corpus.propbank.util.Propbank: A convenience funtion to quickly read only the filename portion of a line from prop.txt.
fileNotFound(File) - Static method in exception org.cleartk.util.CleartkInitializationException
files - Variable in class org.cleartk.corpus.penntreebank.PennTreebankReader
files - Variable in class org.cleartk.util.cr.FilesCollectionReader
FilesCollectionReader - Class in org.cleartk.util.cr: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
FilesCollectionReader() - Constructor for class org.cleartk.util.cr.FilesCollectionReader
filesCount - Variable in class org.cleartk.util.cr.FilesCollectionReader
fileToUri - Variable in class org.cleartk.util.cr.UriCollectionReader
FilteringExtractor<T extends Annotation> - Class in org.cleartk.feature: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
FilteringExtractor(Class<T>, FeatureExtractor1<T>) - Constructor for class org.cleartk.feature.FilteringExtractor
FilteringExtractor(Class<T>, String, FeatureExtractor1<T>) - Constructor for class org.cleartk.feature.FilteringExtractor
finalizeFeatureSet(File) - Method in interface org.cleartk.ml.encoder.features.FeaturesEncoder
finalizeFeatureSet(File) - Method in class org.cleartk.ml.encoder.features.FeaturesEncoder_ImplBase
finalizeFeatureSet(File) - Method in class org.cleartk.ml.encoder.features.FeatureVectorFeaturesEncoder
finalizeFeatureSet(File) - Method in class org.cleartk.ml.encoder.features.NameNumberFeaturesEncoder
finalizeFeatureSet(File) - Method in class org.cleartk.ml.liblinear.encoder.FeatureNodeArrayEncoder
finalizeFeatureSet(File) - Method in class org.cleartk.ml.opennlp.maxent.encoder.ContextValuesFeaturesEncoder
finalizeFeatureSet(File) - Method in class org.cleartk.ml.tksvmlight.TreeFeatureVectorFeaturesEncoder
finalizeFeatureSet(File) - Method in class org.cleartk.ml.weka.WekaFeaturesEncoder
finalizeMap() - Method in class org.cleartk.util.collection.GenericStringMapper
finalizeMap() - Method in interface org.cleartk.util.collection.StringMapper
finalizeOutcomeSet(File) - Method in class org.cleartk.ml.encoder.outcome.BooleanToBooleanOutcomeEncoder
finalizeOutcomeSet(File) - Method in class org.cleartk.ml.encoder.outcome.BooleanToSignOutcomeEncoder
finalizeOutcomeSet(File) - Method in class org.cleartk.ml.encoder.outcome.BooleanToStringOutcomeEncoder
finalizeOutcomeSet(File) - Method in class org.cleartk.ml.encoder.outcome.DoubleToDoubleOutcomeEncoder
finalizeOutcomeSet(File) - Method in interface org.cleartk.ml.encoder.outcome.OutcomeEncoder
finalizeOutcomeSet(File) - Method in class org.cleartk.ml.encoder.outcome.StringArrayToStringArrayEncoder
finalizeOutcomeSet(File) - Method in class org.cleartk.ml.encoder.outcome.StringToIntegerOutcomeEncoder
finalizeOutcomeSet(File) - Method in class org.cleartk.ml.encoder.outcome.StringToStringOutcomeEncoder
finish() - Method in class org.cleartk.ml.baseline.OutcomeOnlyDataWriter
finish() - Method in interface org.cleartk.ml.DataWriter
finish() - Method in class org.cleartk.ml.feature.transform.InstanceDataWriter
finish() - Method in class org.cleartk.ml.jar.DirectoryDataWriter: Basic implementation of DataWriter.finish() and SequenceDataWriter.finish() that calls JarClassifierBuilder.saveToTrainingDirectory(File)
finish() - Method in class org.cleartk.ml.jar.EncodingDirectoryDataWriter
finish() - Method in interface org.cleartk.ml.SequenceDataWriter
finish() - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeDataWriter
finish() - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeDataWriter: Callback called after the last feature vector has been written.
finish() - Method in class org.cleartk.ml.util.PublicFieldDataWriter
finish() - Method in class org.cleartk.ml.util.PublicFieldSequenceDataWriter
finish() - Method in class org.cleartk.ml.viterbi.ViterbiDataWriter
finish() - Method in class org.cleartk.ml.weka.WekaStringOutcomeDataWriter
finish() - Method in class org.cleartk.summarization.classifier.SummarizationDataWriter
fit(double[], boolean[]) - Static method in class org.cleartk.ml.sigmoid.LinWengPlatt
fit(File, File) - Static method in class org.cleartk.ml.svmlight.FitSigmoid
FitSigmoid - Class in org.cleartk.ml.svmlight: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
FitSigmoid() - Constructor for class org.cleartk.ml.svmlight.FitSigmoid
FixedCosineSimilarity - Class in org.cleartk.ml.feature.transform.extractor: Like cosine similarity, but accepts a pre-specified vector, to avoid repeated recalculation of the magnitude
Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
FixedCosineSimilarity(Map<String, Double>) - Constructor for class org.cleartk.ml.feature.transform.extractor.FixedCosineSimilarity
fixedMagnitude - Variable in class org.cleartk.ml.feature.transform.extractor.FixedCosineSimilarity
fixedVector - Variable in class org.cleartk.ml.feature.transform.extractor.FixedCosineSimilarity
fixTextByFileName(String, String) - Static method in class org.cleartk.timeml.tlink.VerbClauseTemporalTrain
folder - Variable in class org.cleartk.test.util.CleartkTestBase
forcePut(String, String) - Method in class org.cleartk.util.collection.CompressedStringBiMap
frameSet - Variable in class org.cleartk.corpus.propbank.util.Propbank
fromFile(File) - Static method in class org.cleartk.ml.svmlight.model.SvmLightModel
fromFile(File) - Static method in class org.cleartk.ml.tksvmlight.model.TreeKernelSvmModel
fromInputStream(InputStream) - Static method in class org.cleartk.ml.svmlight.model.SvmLightModel
fromInputStream(InputStream) - Static method in class org.cleartk.ml.tksvmlight.model.TreeKernelSvmModel
fromManifest(Manifest) - Static method in class org.cleartk.ml.jar.JarClassifierBuilder: Loads a classifier builder from a manifest.
fromString(String) - Static method in class org.cleartk.corpus.propbank.util.Propbank: Parses one Propbank entry and returns its representation as a Propbank object.
fromString(String) - Static method in class org.cleartk.corpus.propbank.util.PropbankCorefRelation
fromString(String) - Static method in class org.cleartk.corpus.propbank.util.PropbankNodeRelation
fromString(String) - Static method in class org.cleartk.corpus.propbank.util.PropbankRelation: Parses a relation taken form a Propbank entry and returns its representation as the appropriate PropbankRelation object.
fromString(String) - Static method in class org.cleartk.corpus.propbank.util.PropbankSplitRelation
fromString(String) - Static method in class org.cleartk.corpus.propbank.util.PropbankTerminalRelation
fromTrainingDirectory(File) - Static method in class org.cleartk.ml.jar.JarClassifierBuilder: Loads a classifier builder from manifest in the training directory.

G

GenericDataWriterFactory<OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Serves as a common base class for data writer factories such as DefaultDataWriterFactory and DefaultSequenceDataWriterFactory.
GenericDataWriterFactory() - Constructor for class org.cleartk.ml.jar.GenericDataWriterFactory
GenericJarClassifierFactory<CLASSIFIER_TYPE> - Class in org.cleartk.ml.jar: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
GenericJarClassifierFactory() - Constructor for class org.cleartk.ml.jar.GenericJarClassifierFactory
GenericLibLinearClassifier<OUTCOME_TYPE> - Class in org.cleartk.ml.liblinear: Copyright (c) 2013, Regents of the University of Colorado
All rights reserved.
GenericLibLinearClassifier(FeaturesEncoder<FeatureNode[]>, OutcomeEncoder<OUTCOME_TYPE, Integer>, Model) - Constructor for class org.cleartk.ml.liblinear.GenericLibLinearClassifier
GenericLibLinearClassifierBuilder<CLASSIFIER_TYPE extends GenericLibLinearClassifier<OUTCOME_TYPE>,OUTCOME_TYPE> - Class in org.cleartk.ml.liblinear: Copyright (c) 2013, Regents of the University of Colorado
All rights reserved.
GenericLibLinearClassifierBuilder() - Constructor for class org.cleartk.ml.liblinear.GenericLibLinearClassifierBuilder
GenericLibLinearDataWriter<CLASSIFIER_BUILDER_TYPE extends GenericLibLinearClassifierBuilder<? extends GenericLibLinearClassifier<OUTCOME_TYPE>,OUTCOME_TYPE>,OUTCOME_TYPE> - Class in org.cleartk.ml.liblinear: Copyright (c) 2013, Regents of the University of Colorado
All rights reserved.
GenericLibLinearDataWriter(File) - Constructor for class org.cleartk.ml.liblinear.GenericLibLinearDataWriter
GenericLibSvmClassifierBuilder<CLASSIFIER_TYPE extends Classifier<OUTCOME_TYPE>,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE,MODEL_TYPE> - Class in org.cleartk.ml.libsvm: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
GenericLibSvmClassifierBuilder() - Constructor for class org.cleartk.ml.libsvm.GenericLibSvmClassifierBuilder
GenericStringMapper - Class in org.cleartk.util.collection: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
GenericStringMapper(int) - Constructor for class org.cleartk.util.collection.GenericStringMapper
Genia2PlainText - Class in org.cleartk.corpus.genia.pos: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
Genia2PlainText() - Constructor for class org.cleartk.corpus.genia.pos.Genia2PlainText
GENIA_POS - Static variable in interface org.cleartk.corpus.genia.pos.GeniaPosViewName: The view containing Genia part of speech formatted text.
GENIA_POS_VIEW - Static variable in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
GeniaParse - Class in org.cleartk.corpus.genia.pos.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
GeniaParse() - Constructor for class org.cleartk.corpus.genia.pos.util.GeniaParse
GeniaPosGoldReader - Class in org.cleartk.corpus.genia.pos: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
GeniaPosGoldReader() - Constructor for class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
GeniaPosParser - Class in org.cleartk.corpus.genia.pos.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
GeniaPosParser(File) - Constructor for class org.cleartk.corpus.genia.pos.util.GeniaPosParser
GeniaPosParser() - Constructor for class org.cleartk.corpus.genia.pos.util.GeniaPosParser
GeniaPosViewName - Interface in org.cleartk.corpus.genia.pos: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
GeniaSentence - Class in org.cleartk.corpus.genia.pos.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
GeniaSentence() - Constructor for class org.cleartk.corpus.genia.pos.util.GeniaSentence
GeniaTag - Class in org.cleartk.corpus.genia.pos.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
GeniaTag(String, List<Span>) - Constructor for class org.cleartk.corpus.genia.pos.util.GeniaTag
GeniaTag(String, Span) - Constructor for class org.cleartk.corpus.genia.pos.util.GeniaTag
GenKeyBiMap<K,V> - Interface in org.cleartk.util.collection: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
get(int) - Method in class org.cleartk.ml.util.featurevector.ArrayFeatureVector
get(int) - Method in class org.cleartk.ml.util.featurevector.FeatureVector: Return the value at index.
get(int) - Method in class org.cleartk.ml.util.featurevector.SparseFeatureVector
getA() - Method in class org.cleartk.ml.sigmoid.Sigmoid
getActualTotal(T) - Method in class org.cleartk.eval.util.ConfusionMatrix: Computes the total number of times the class actually appeared in the data.
getAlpha() - Method in class org.cleartk.ml.svmlight.model.SupportVector
getAncestor(int) - Method in class org.cleartk.util.treebank.TreebankNode
getAncestorWithType(TreebankNode, String) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil
getAnnotatedFileName(String) - Static method in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
getAnnotatedFileNames(File) - Static method in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
getAnnotations(JCas) - Method in class org.cleartk.corpus.timeml.TempEval2013Writer
getAnnotationsExtent(List<? extends Annotation>) - Static method in class org.cleartk.util.AnnotationUtil
getAnnotatorClass() - Method in class org.cleartk.timeml.util.CleartkInternalModelFactory
getAnnotatorDescription(String) - Method in class org.cleartk.timeml.util.CleartkInternalModelFactory
getAnnotatorDescription() - Method in class org.cleartk.timeml.util.CleartkInternalModelFactory
getArch() - Method in class org.cleartk.util.PlatformDetection
getAttribute(Event) - Method in class org.cleartk.timeml.event.EventAspectAnnotator
getAttribute(Event) - Method in class org.cleartk.timeml.event.EventAttributeAnnotator: Get the attribute value from the Event annotation.
getAttribute(Event) - Method in class org.cleartk.timeml.event.EventClassAnnotator
getAttribute(Event) - Method in class org.cleartk.timeml.event.EventModalityAnnotator
getAttribute(Event) - Method in class org.cleartk.timeml.event.EventPolarityAnnotator
getAttribute(Event) - Method in class org.cleartk.timeml.event.EventTenseAnnotator
getB() - Method in class org.cleartk.ml.sigmoid.Sigmoid
getBaseDescription() - Method in class org.cleartk.timeml.util.CleartkInternalModelFactory
getBaseForm() - Method in class org.cleartk.corpus.propbank.util.Propbank
getBegin() - Method in class org.cleartk.corpus.genia.pos.util.Span
getBegin() - Method in class org.cleartk.token.tokenizer.Token
getBuffer() - Method in class org.cleartk.util.InputStreamHandler
getCentroidDataURI(String, URI) - Static method in class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor
getCFType() - Method in interface org.cleartk.summarization.SumBasic.Options
getCFType() - Method in interface org.cleartk.summarization.SumBasicModel.Options
getChildren() - Method in class org.cleartk.util.treebank.TreebankNode
getClasses() - Method in class org.cleartk.eval.util.ConfusionMatrix: Gives the set of all classes in the confusion matrix.
getClassifier(String) - Method in class org.cleartk.ml.multi.CleartkMultiAnnotator: Gets the classifier associated with name.
getClassifierBuilder() - Method in class org.cleartk.ml.jar.DirectoryDataWriter: Get the JarClassifierBuilder associated with this DataWriter.
getClassifierClass() - Method in class org.cleartk.ml.jar.GenericJarClassifierFactory
getClassifierClass() - Method in class org.cleartk.ml.jar.JarClassifierFactory
getClassifierClass() - Method in class org.cleartk.ml.jar.SequenceJarClassifierFactory
getClassifierDescription(File) - Static method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
getClassifierDescription(String) - Static method in class org.cleartk.examples.pos.ExamplePosAnnotator
getClassifierJarURL() - Method in class org.cleartk.timeml.util.CleartkInternalModelFactory
getCleanedTimeBankDir(String) - Static method in class org.cleartk.timeml.tlink.VerbClauseTemporalTrain
getCollectionReader(String) - Static method in class org.cleartk.corpus.conll2005.Conll2005GoldReader
getCollectionReader(String...) - Static method in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
getCollectionReader(List<File>) - Static method in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
getCollectionReader(List<File>, Set<String>) - Static method in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
getCollectionReader(List<ITEM_TYPE>) - Method in class org.cleartk.eval.Evaluation_ImplBase: Creates a CollectionReader from the given items.
getCollectionReader(List<File>) - Method in class org.cleartk.examples.chunking.EvaluateNamedEntityChunker
getCollectionReader(List<File>) - Method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation
getCollectionReader(Collection<File>) - Method in class org.cleartk.summarization.SumBasic
getCollectionReader(Collection<ITEM_TYPE>) - Method in class org.cleartk.summarization.Summarize_ImplBase
getCollectionReader(List<String>) - Method in class org.cleartk.timeml.eval.TempEval2010Evaluation
getCollectionReader(List<File>) - Method in class org.cleartk.timeml.eval.TempEval2013Evaluation
getCollectionReader(String) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getCollectionReaderFromDirectory(File) - Static method in class org.cleartk.util.cr.UriCollectionReader
getCollectionReaderFromDirectory(File, Class<? extends IOFileFilter>, Class<? extends IOFileFilter>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getCollectionReaderFromFiles(Collection<File>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getCollectionReaderFromUris(Collection<URI>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getCollectionReaderWithPatterns(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getCollectionReaderWithSuffixes(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getCollectionReaderWithView(String, String) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getCommonAncestor() - Method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil.TreebankNodePath
getContext() - Method in class org.cleartk.ml.opennlp.maxent.encoder.ContextValues
getCorefRelations() - Method in class org.cleartk.corpus.propbank.util.PropbankCorefRelation
getCount(T, T) - Method in class org.cleartk.eval.util.ConfusionMatrix: Gives the count of the number of times the "predicted" class was predicted for the "actual" class.
getCount(Object) - Method in class org.cleartk.ml.feature.Counts
getCreateViewAggregateDescription(String) - Static method in class org.cleartk.util.ae.UriToXmiCasAnnotator: Use this aggregate description if UriToDocumentTextAnnotator will be writing to a mapped view.
getDataWriter(String) - Method in class org.cleartk.ml.multi.CleartkMultiAnnotator: Gets the DataWriter associated with name.
getDataWriterClass() - Method in class org.cleartk.timeml.util.CleartkInternalModelFactory
getDefaultValue() - Method in class org.cleartk.timeml.event.EventAspectAnnotator
getDefaultValue() - Method in class org.cleartk.timeml.event.EventAttributeAnnotator: The attribute value that should be considered as a default, e.g.
getDefaultValue() - Method in class org.cleartk.timeml.event.EventClassAnnotator
getDefaultValue() - Method in class org.cleartk.timeml.event.EventModalityAnnotator
getDefaultValue() - Method in class org.cleartk.timeml.event.EventPolarityAnnotator
getDefaultValue() - Method in class org.cleartk.timeml.event.EventTenseAnnotator
getDelegatedModelDirectory(File) - Method in class org.cleartk.ml.viterbi.ViterbiClassifierBuilder
getDepth(TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Calculates the depth of the TreebankNode.
getDescription(String) - Static method in class org.cleartk.berkeleyparser.ParserAnnotator
getDescription() - Static method in class org.cleartk.clearnlp.DependencyParser: Convenience method for creating Analysis Engine for ClearNLP's dependency parser using default English model files
getDescription(String, String) - Static method in class org.cleartk.clearnlp.DependencyParser
getDescription() - Static method in class org.cleartk.clearnlp.MpAnalyzer: Convenience method to create Analysis Engine for ClearNLP's POSTagger + Lemmatizer using default English models and dictionaries.
getDescription(String) - Static method in class org.cleartk.clearnlp.MpAnalyzer
getDescription() - Static method in class org.cleartk.clearnlp.MpAnalyzer_ImplBase: Convenience method to create Analysis Engine for ClearNLP's POSTagger + Lemmatizer using default English models and dictionaries.
getDescription(String) - Static method in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
getDescription() - Static method in class org.cleartk.clearnlp.PosTagger
getDescription(String, String) - Static method in class org.cleartk.clearnlp.PosTagger
getDescription() - Static method in class org.cleartk.clearnlp.SemanticRoleLabeler
getDescription(String, String, String, String) - Static method in class org.cleartk.clearnlp.SemanticRoleLabeler
getDescription() - Static method in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase: Convenience method for creating Analysis Engine for ClearNLP's dependency parser using default English model files
getDescription() - Static method in class org.cleartk.clearnlp.Tokenizer
getDescription(String) - Static method in class org.cleartk.clearnlp.Tokenizer
getDescription(String, URI) - Static method in class org.cleartk.clearnlp.Tokenizer
getDescription(String) - Static method in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
getDescription() - Static method in class org.cleartk.corpus.penntreebank.TreebankGoldAnnotator
getDescription() - Static method in class org.cleartk.corpus.timeml.PlainTextTlinkGoldAnnotator
getDescription(String) - Static method in class org.cleartk.corpus.timeml.TempEval2007Writer
getDescription() - Static method in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
getDescription() - Static method in class org.cleartk.corpus.timeml.TempEval2010Writer
getDescription(File) - Static method in class org.cleartk.corpus.timeml.TempEval2013Writer
getDescription() - Static method in class org.cleartk.corpus.timeml.TimeMlGoldAnnotator
getDescription(String) - Static method in class org.cleartk.corpus.timeml.TreebankAligningAnnotator
getDescription() - Static method in class org.cleartk.examples.chunking.util.MascGoldAnnotator
getDescription() - Static method in class org.cleartk.maltparser.MaltParser
getDescription(String) - Static method in class org.cleartk.maltparser.MaltParser
getDescription() - Static method in class org.cleartk.opennlp.tools.ParserAnnotator
getDescription(String) - Static method in class org.cleartk.opennlp.tools.PosTagger
getDescription() - Static method in class org.cleartk.opennlp.tools.PosTaggerAnnotator
getDescription() - Static method in class org.cleartk.opennlp.tools.SentenceAnnotator
getDescription(String) - Static method in class org.cleartk.opennlp.tools.Tokenizer
getDescription(String) - Static method in class org.cleartk.snowball.DefaultSnowballStemmer
getDescription() - Static method in class org.cleartk.stanford.corenlp.StanfordCoreNlpAnnotator
getDescription(File, boolean) - Static method in class org.cleartk.summarization.SummarySentenceWriterAnnotator
getDescription() - Static method in class org.cleartk.token.tokenizer.TokenAnnotator
getDescription(Class<? extends Annotation>) - Static method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
getDescription(Class<? extends Annotation>, Class<? extends Annotation>) - Static method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
getDescription(Class<? extends Annotation>, Class<? extends Annotation>, char, char) - Static method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
getDescription() - Static method in class org.cleartk.util.ae.UriToDocumentTextAnnotator
getDescription() - Static method in class org.cleartk.util.ae.UriToXmiCasAnnotator
getDescription(File) - Static method in class org.cleartk.util.ae.XmiWriter
getDescription(String) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getDescription(File) - Static method in class org.cleartk.util.cr.linereader.LineReaderXmiWriter
getDescriptionForView(String) - Static method in class org.cleartk.util.ae.UriToDocumentTextAnnotator: This description will read the contents into the specify view.
getDescriptionFromDirectory(File) - Static method in class org.cleartk.util.cr.UriCollectionReader
getDescriptionFromDirectory(File, Class<? extends IOFileFilter>, Class<? extends IOFileFilter>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getDescriptionFromFiles(Collection<File>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getDescriptionFromUris(Collection<URI>) - Static method in class org.cleartk.util.cr.UriCollectionReader
getDescriptionNoTLINKs() - Static method in class org.cleartk.corpus.timeml.TimeMlGoldAnnotator
getDescriptionPOSTagsOnly() - Static method in class org.cleartk.corpus.penntreebank.TreebankGoldAnnotator
getDescriptionWithPatterns(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getDescriptionWithSuffixes(String, String, String...) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getDescriptionWithView(String, String) - Static method in class org.cleartk.util.cr.FilesCollectionReader
getDF(String) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor.IDFMap
getDocumentFrequencyDataURI(String, URI) - Static method in class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor
getDocumentsDir() - Method in interface org.cleartk.summarization.SumBasic.Options
getEncodersFile(File) - Static method in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
getEnd() - Method in class org.cleartk.corpus.genia.pos.util.Span
getEnd() - Method in class org.cleartk.token.tokenizer.Token
getEvaluation(File, File, File) - Method in class org.cleartk.timeml.eval.TempEval2010Main
getEvaluation(File, File, File) - Method in class org.cleartk.timeml.eval.TempEval2010TaskAAttributes
getEvaluation(File, File, File) - Method in class org.cleartk.timeml.eval.TempEval2010TaskAExtents
getEvaluation(File, File, File) - Method in class org.cleartk.timeml.eval.TempEval2010TaskBAttributes
getEvaluation(File, File, File) - Method in class org.cleartk.timeml.eval.TempEval2010TaskBExtents
getEvaluation(File, File, File) - Method in class org.cleartk.timeml.eval.TempEval2010TaskC
getEvaluation(File, File, File) - Method in class org.cleartk.timeml.eval.TempEval2010TaskD
getEvaluation(File, File, File) - Method in class org.cleartk.timeml.eval.TempEval2010TaskE
getEvaluation(File, File, File) - Method in class org.cleartk.timeml.eval.TempEval2010TaskF
getExecutableSuffix() - Method in class org.cleartk.util.PlatformDetection
getExtractors() - Method in class org.cleartk.ml.feature.extractor.CombinedExtractor1
getFeature() - Method in class org.cleartk.corpus.propbank.util.Proplabel
getFeature(JCas) - Method in class org.cleartk.ml.chunking.Chunking_ImplBase
getFeatureName() - Method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator.CountAnnotationExtractor
getFeatureName() - Method in class org.cleartk.feature.syntax.SubCategorizationExtractor
getFeatureName() - Method in class org.cleartk.feature.syntax.SyntacticFirstChildOfGrandparentOfLeafExtractor
getFeatureName() - Method in class org.cleartk.feature.TextSliceExtractor
getFeatureName() - Method in class org.cleartk.feature.token.TokenTextForSelectedPosExtractor
getFeatureName() - Method in class org.cleartk.ml.feature.Counts
getFeatureName() - Method in class org.cleartk.ml.feature.extractor.CoveredTextExtractor
getFeatureName() - Method in interface org.cleartk.ml.feature.extractor.NamedFeatureExtractor1: Gets the name that will be used for all features created by this feature extractor.
getFeatureName() - Method in class org.cleartk.ml.feature.extractor.TypePathExtractor
getFeatureName() - Method in class org.cleartk.ml.feature.extractor.WhiteSpaceExtractor
getFeatureName() - Method in class org.cleartk.ml.feature.function.CharacterCategoryPatternFunction
getFeatureName() - Method in class org.cleartk.timeml.util.TimeWordsExtractor
getFeatures() - Method in class org.cleartk.ml.feature.FeatureCollection
getFeatures() - Method in class org.cleartk.ml.feature.transform.TransformableFeature
getFeatures() - Method in class org.cleartk.ml.Instance: Get the list of features for this instance.
getFeatures() - Method in class org.cleartk.ml.tksvmlight.TreeFeatureVector: Get the standard (non-tree) features.
getFeaturesEncoder() - Method in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
getFile(JCas) - Method in class org.cleartk.summarization.SumBasic.XMIReader
getFile(JCas) - Method in class org.cleartk.timeml.eval.TempEval2010Evaluation.XMIReader
getFilename() - Method in class org.cleartk.corpus.propbank.util.Propbank
getFilesFromDirectory(File) - Static method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation
getFocusClass() - Method in class org.cleartk.ml.feature.extractor.TypePathExtractor
getFrameSet() - Method in class org.cleartk.corpus.propbank.util.Propbank
getHead(JCas, DependencyRelation) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
getHead(JCas, RELATION_TYPE) - Method in interface org.cleartk.clearnlp.DependencyOps
getHeadRelations(JCas, DependencyNode) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
getHeadRelations(JCas, NODE_TYPE) - Method in interface org.cleartk.clearnlp.DependencyOps
getHeight() - Method in class org.cleartk.corpus.propbank.util.PropbankNodeRelation
getHyphenTag() - Method in class org.cleartk.corpus.propbank.util.Proplabel
getIdentifier() - Method in class org.cleartk.ml.feature.Counts
getIdentifier() - Method in class org.cleartk.ml.feature.FeatureCollection
getIDF(String) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor.IDFMap
getIndex() - Method in exception org.cleartk.ml.util.featurevector.InvalidFeatureVectorValueException
getInflectionValue() - Method in class org.cleartk.corpus.propbank.util.Propbank
getInputDirectory() - Method in interface org.cleartk.examples.linewriter.Docs2Sentences.Options
getInputDirectory() - Method in interface org.cleartk.examples.linewriter.Docs2Tokens.Options
getInputStream(Class<?>, String) - Static method in class org.cleartk.util.IoUtil: This method attempts to create an input stream from the given path by: Trying to parse it as a URL Trying to find it on the classpath, relative to the given class Trying to find it as a file on the file system
getInputStreamAsBufferedString(InputStream) - Static method in class org.cleartk.util.InputStreamHandler
getInputStreamAsList(InputStream) - Static method in class org.cleartk.util.InputStreamHandler
getInteger(String) - Method in class org.cleartk.util.collection.GenericStringMapper
getInteger(String) - Method in interface org.cleartk.util.collection.StringMapper
getLabel(JCas, DependencyRelation) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
getLabel(JCas, RELATION_TYPE) - Method in interface org.cleartk.clearnlp.DependencyOps
getLabel() - Method in class org.cleartk.corpus.genia.pos.util.GeniaTag
getLabel() - Method in class org.cleartk.corpus.propbank.util.Proplabel
getLeafNode(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: Uses the leafNodePattern to identify a string as a terminal.
getLemma(JCas, Token) - Method in class org.cleartk.clearnlp.CleartkTokenOps
getLemma(JCas, TOKEN_TYPE) - Method in interface org.cleartk.clearnlp.TokenOps
getMaxNumSentences() - Method in interface org.cleartk.summarization.SumBasic.Options
getMaxNumSentences() - Method in interface org.cleartk.summarization.SumBasicModel.Options
getMedline() - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
getModelDir() - Method in interface org.cleartk.summarization.SumBasic.Options
getModelDirectory() - Method in interface org.cleartk.examples.chunking.RunNamedEntityChunker.Options
getModelDirectory() - Method in interface org.cleartk.examples.chunking.TrainNamedEntityChunker.Options
getModelFile(File) - Method in class org.cleartk.ml.libsvm.GenericLibSvmClassifierBuilder
getModelFile(File) - Method in class org.cleartk.ml.svmlight.SvmLightClassifierBuilder_ImplBase
getModelFile(File) - Method in class org.cleartk.summarization.classifier.SummarizationClassifierBuilder
getModelJarFile(File) - Static method in class org.cleartk.ml.jar.JarClassifierBuilder: Get the classifier jar file, as packaged by JarClassifierBuilder.packageClassifier(File).
getModelJarFile(String) - Static method in class org.cleartk.ml.jar.JarClassifierBuilder
getModelName() - Method in class org.cleartk.ml.libsvm.GenericLibSvmClassifierBuilder
getModelName() - Method in class org.cleartk.ml.libsvm.LibSvmClassifierBuilder
getModelName() - Method in class org.cleartk.summarization.classifier.SumBasicClassifierBuilder
getModelName() - Method in class org.cleartk.summarization.classifier.SummarizationClassifierBuilder
getModelName() - Method in class org.cleartk.summarization.SumBasicModel
getModelName() - Method in class org.cleartk.summarization.SummarizationModel_ImplBase
getModelsDirectory() - Method in interface org.cleartk.examples.chunking.EvaluateNamedEntityChunker.Options
getModelsDirectory() - Method in interface org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation.Options
getModelsDirectory() - Method in interface org.cleartk.examples.documentclassification.advanced.RunModel.Options
getModelsDirectory() - Method in interface org.cleartk.examples.documentclassification.advanced.TrainModel.Options
getModelsDirectory() - Method in interface org.cleartk.examples.documentclassification.basic.RunModel.Options
getModelsDirectory() - Method in interface org.cleartk.examples.documentclassification.basic.TrainModel.Options
getModelSubdirectory(File) - Method in class org.cleartk.timeml.eval.ModelInfo
getName() - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Bag
getName() - Method in interface org.cleartk.ml.feature.extractor.CleartkExtractor.Context: Gets the base feature name that will be used in Features generated by this context.
getName() - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Count
getName() - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Covered
getName() - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Focus
getName() - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Ngram
getName() - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Ngrams
getName() - Method in class org.cleartk.ml.Feature
getNext(JCas) - Method in class org.cleartk.corpus.ace2005.Ace2005GoldReader
getNext(JCas) - Method in class org.cleartk.corpus.conll2003.Conll2003GoldReader
getNext(JCas) - Method in class org.cleartk.corpus.conll2005.Conll2005GoldReader
getNext(JCas) - Method in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
getNext(JCas) - Method in class org.cleartk.corpus.penntreebank.PennTreebankReader: Reads the next file and stores its text in cas as the "TreebankView" SOFA.
getNext(JCas) - Method in class org.cleartk.corpus.propbank.PropbankGoldReader: Reads the next file and stores its text in cas as the "TreebankView" SOFA.
getNext(JCas) - Method in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
getNext(JCas) - Method in class org.cleartk.util.cr.FilesCollectionReader
getNext(JCas) - Method in class org.cleartk.util.cr.linereader.LineReader
getNext(JCas) - Method in class org.cleartk.util.cr.UriCollectionReader
getNext(JCas) - Method in class org.cleartk.util.cr.XReader
getNextJarEntry(JarInputStream, String) - Static method in class org.cleartk.ml.jar.JarStreams
getNumSamples() - Method in class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor.MinMaxRunningStat
getNumSamples() - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat
getOrGenerateInteger(String) - Method in class org.cleartk.util.collection.GenericStringMapper
getOrGenerateInteger(String) - Method in interface org.cleartk.util.collection.StringMapper
getOrGenerateKey(String) - Method in class org.cleartk.util.collection.CompressedStringBiMap
getOrGenerateKey(V) - Method in interface org.cleartk.util.collection.GenKeyBiMap
getOs() - Method in class org.cleartk.util.PlatformDetection
getOutcome() - Method in class org.cleartk.ml.Instance: Get the current label for the instance.
getOutcome - Variable in class org.cleartk.timeml.eval.ModelInfo
getOutcomeEncoder() - Method in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
getOutcomeSuffix(CHUNK_TYPE, Feature) - Method in class org.cleartk.ml.chunking.Chunking_ImplBase
getOutputDirectory() - Method in interface org.cleartk.examples.treebank.TreebankParsingExample.Options
getOutputDirectory() - Method in class org.cleartk.ml.jar.DirectoryDataWriterFactory
getOutputFile() - Method in interface org.cleartk.examples.linewriter.Docs2Sentences.Options
getOutputFile() - Method in interface org.cleartk.examples.linewriter.Docs2Tokens.Options
getOutputScores() - Method in interface org.cleartk.summarization.SumBasic.Options
getPackageName() - Method in class org.cleartk.ml.libsvm.tk.TkLibSvmStringOutcomeClassifierBuilder
getPackageName() - Method in class org.cleartk.ml.tksvmlight.TkSvmLightStringOutcomeClassifierBuilder
getPackageName() - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifierBuilder
getParameterValue(String, String) - Static method in class org.cleartk.util.ParamUtil
getParent(TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil
getParent() - Method in class org.cleartk.util.treebank.TreebankNode
getParseBegin() - Method in class org.cleartk.util.treebank.TreebankNode
getParseEnd() - Method in class org.cleartk.util.treebank.TreebankNode
getPath() - Method in class org.cleartk.ml.feature.extractor.TypePathExtractor
getPath(TreebankNode, TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Get the path from the source TreebankNode to the target TreebankNode via the least common ancestor.
getPathToRoot(TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Find the path from a TreebankNode to the root of the tree it belongs to.
getPos(JCas, Token) - Method in class org.cleartk.clearnlp.CleartkTokenOps
getPos(JCas, TOKEN_TYPE) - Method in interface org.cleartk.clearnlp.TokenOps
getPosTag(Token) - Method in class org.cleartk.berkeleyparser.DefaultInputTypesHelper
getPosTag(TOKEN_TYPE) - Method in class org.cleartk.berkeleyparser.InputTypesHelper
getPosTag(Token) - Method in class org.cleartk.opennlp.tools.parser.DefaultInputTypesHelper
getPosTag(TOKEN_TYPE) - Method in class org.cleartk.opennlp.tools.parser.InputTypesHelper
getPosTags() - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
getPosTags() - Method in class org.cleartk.corpus.genia.pos.util.GeniaSentence
getPredictedTotal(T) - Method in class org.cleartk.eval.util.ConfusionMatrix: Computes the total number of times the class was predicted by the classifier.
getPreposition() - Method in class org.cleartk.corpus.propbank.util.Proplabel
getProbability(String) - Method in class org.cleartk.summarization.SumBasicModel.TermFrequencyMap
getProgress() - Method in class org.cleartk.corpus.ace2005.Ace2005GoldReader: Progress is measured by the number of files in the target directory - not by the number of times getNext has been (and will be) called.
getProgress() - Method in class org.cleartk.corpus.conll2003.Conll2003GoldReader
getProgress() - Method in class org.cleartk.corpus.conll2005.Conll2005GoldReader
getProgress() - Method in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
getProgress() - Method in class org.cleartk.corpus.penntreebank.PennTreebankReader
getProgress() - Method in class org.cleartk.corpus.propbank.PropbankGoldReader
getProgress() - Method in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
getProgress() - Method in class org.cleartk.util.cr.FilesCollectionReader
getProgress() - Method in class org.cleartk.util.cr.linereader.LineReader
getProgress() - Method in class org.cleartk.util.cr.UriCollectionReader
getPropLabels() - Method in class org.cleartk.corpus.propbank.util.Propbank
getPropTxt() - Method in class org.cleartk.corpus.propbank.util.Propbank
getPropTxt() - Method in class org.cleartk.corpus.propbank.util.Proplabel
getQid() - Method in class org.cleartk.ml.svmlight.rank.QidInstance
getRelation() - Method in class org.cleartk.corpus.propbank.util.Proplabel
getRelations() - Method in class org.cleartk.corpus.propbank.util.PropbankSplitRelation
getScoreFunction(MutualInformationFeatureSelectionExtractor.CombineScoreMethod) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats
getSeenWordsProbability() - Method in interface org.cleartk.summarization.SumBasic.Options
getSeenWordsProbability() - Method in interface org.cleartk.summarization.SumBasicModel.Options
getSelectedFeatures() - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor
getSelectedSentenceScores() - Method in class org.cleartk.summarization.SummarizationModel_ImplBase
getSemTags() - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
getSemTags() - Method in class org.cleartk.corpus.genia.pos.util.GeniaSentence
getSentenceNumber() - Method in class org.cleartk.corpus.propbank.util.Propbank
getSentences(JCas) - Method in class org.cleartk.berkeleyparser.DefaultInputTypesHelper
getSentences(JCas) - Method in class org.cleartk.berkeleyparser.InputTypesHelper
getSentences() - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
getSentences(JCas) - Method in class org.cleartk.opennlp.tools.parser.DefaultInputTypesHelper
getSentences(JCas) - Method in class org.cleartk.opennlp.tools.parser.InputTypesHelper
getSentencesOutFile() - Method in interface org.cleartk.summarization.SumBasic.Options
getSourceTargetPairs(JCas) - Method in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase: Returns the (source, target) anchor pairs for which a relation should be classified.
getSourceTargetPairs(JCas) - Method in class org.cleartk.timeml.tlink.TemporalLinkEventToDocumentCreationTimeAnnotator
getSourceTargetPairs(JCas) - Method in class org.cleartk.timeml.tlink.TemporalLinkEventToSameSentenceTimeAnnotator
getSourceTargetPairs(JCas) - Method in class org.cleartk.timeml.tlink.TemporalLinkEventToSubordinatedEventAnnotator
getSourceTargetPairs(JCas) - Method in class org.cleartk.timeml.tlink.TemporalLinkMainEventToNextSentenceMainEventAnnotator
getSourceToAncestorPath() - Method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil.TreebankNodePath
getSpan() - Method in class org.cleartk.corpus.genia.pos.util.GeniaSentence
getSpan - Variable in class org.cleartk.timeml.eval.ModelInfo
getSpans() - Method in class org.cleartk.corpus.genia.pos.util.GeniaTag
getStopwordsFile() - Method in interface org.cleartk.summarization.SumBasic.Options
getSubChunkToOutcomeMap(JCas, List<SUB_CHUNK_TYPE>, List<CHUNK_TYPE>) - Method in class org.cleartk.ml.chunking.BiesoChunking
getSubChunkToOutcomeMap(JCas, List<SUB_CHUNK_TYPE>, List<CHUNK_TYPE>) - Method in class org.cleartk.ml.chunking.BioChunking
getSubChunkToOutcomeMap(JCas, List<SUB_CHUNK_TYPE>, List<CHUNK_TYPE>) - Method in class org.cleartk.ml.chunking.Chunking_ImplBase: Produce a map from sub-chunk annotations to their outcome prefixes (e.g.
getSubChunkToOutcomeMap(JCas, List<SUB_CHUNK_TYPE>, List<CHUNK_TYPE>) - Method in class org.cleartk.ml.chunking.IoChunking
getSurroundingText(JCas, Annotation, Class<TOKEN_TYPE>, int, boolean) - Static method in class org.cleartk.util.AnnotationUtil: This method provides a way of getting some text before or after an annotation specified by some "window" of "tokens".
getTag(JCas, Token) - Method in class org.cleartk.token.pos.impl.DefaultPosAnnotator
getTag(JCas, TOKEN_TYPE) - Method in class org.cleartk.token.pos.PosAnnotator
getTaggerName() - Method in class org.cleartk.corpus.propbank.util.Propbank
getTags() - Method in class org.cleartk.util.treebank.TreebankNode
getTargetToAncestorPath() - Method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil.TreebankNodePath
getTerminal() - Method in class org.cleartk.corpus.propbank.util.Propbank
getTerminal(int) - Method in class org.cleartk.util.treebank.TopTreebankNode
getTerminalCount() - Method in class org.cleartk.util.treebank.TopTreebankNode
getTerminalNumber() - Method in class org.cleartk.corpus.propbank.util.PropbankNodeRelation
getTerminalNumber() - Method in class org.cleartk.corpus.propbank.util.PropbankTerminalRelation
getTerminals(TreebankNode) - Method in class org.cleartk.opennlp.tools.parser.DefaultOutputTypesHelper
getTestDirectory() - Method in interface org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation.Options
getTestDirectory() - Method in interface org.cleartk.examples.documentclassification.advanced.RunModel.Options
getTestDirectory() - Method in interface org.cleartk.examples.documentclassification.basic.RunModel.Options
getText() - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
getText() - Method in class org.cleartk.util.treebank.TreebankNode
getText() - Method in interface org.cleartk.util.treebank.TreebankObject
getTextBegin() - Method in class org.cleartk.util.treebank.TreebankNode
getTextEnd() - Method in class org.cleartk.util.treebank.TreebankNode
getTextFile() - Method in interface org.cleartk.examples.chunking.RunNamedEntityChunker.Options
getTokenField() - Method in interface org.cleartk.summarization.SumBasic.Options
getTokenOps() - Method in class org.cleartk.clearnlp.Tokenizer
getTokenOps() - Method in class org.cleartk.clearnlp.Tokenizer_ImplBase
getTokens(JCas, Sentence) - Method in class org.cleartk.berkeleyparser.DefaultInputTypesHelper
getTokens(JCas, SENTENCE_TYPE) - Method in class org.cleartk.berkeleyparser.InputTypesHelper
getTokens(JCas, Sentence) - Method in class org.cleartk.opennlp.tools.parser.DefaultInputTypesHelper
getTokens(JCas, SENTENCE_TYPE) - Method in class org.cleartk.opennlp.tools.parser.InputTypesHelper
getTokens(String) - Method in interface org.cleartk.token.tokenizer.Tokenizer
getTokens(String) - Method in class org.cleartk.token.tokenizer.Tokenizer_ImplBase: performs tokenization on the input text and returns the character offsets corresponding to the begining and end of each token w.r.t.
getTokenText() - Method in class org.cleartk.token.tokenizer.Token
getTokenTexts(String) - Method in class org.cleartk.token.tokenizer.PennTreebankTokenizer: Tokenizes the input text and returns a string array corresponding to the tokens.
getTokenTexts(String) - Method in class org.cleartk.token.tokenizer.Subtokenizer
getTokenTexts(String) - Method in class org.cleartk.token.tokenizer.Tokenizer_ImplBase
getTopNode(TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil
getTopNode() - Method in class org.cleartk.util.treebank.TreebankNode
getTotalCount() - Method in class org.cleartk.ml.feature.Counts
getTotalDocumentCount() - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor.IDFMap
getTrainDirectory() - Method in interface org.cleartk.examples.chunking.EvaluateNamedEntityChunker.Options
getTrainDirectory() - Method in interface org.cleartk.examples.chunking.TrainNamedEntityChunker.Options
getTrainDirectory() - Method in interface org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation.Options
getTrainDirectory() - Method in interface org.cleartk.examples.documentclassification.advanced.TrainModel.Options
getTrainDirectory() - Method in interface org.cleartk.examples.documentclassification.basic.TrainModel.Options
getTrainingArguments() - Method in interface org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation.Options
getTrainingArguments() - Method in interface org.cleartk.examples.documentclassification.advanced.TrainModel.Options
getTrainingArguments() - Method in interface org.cleartk.examples.documentclassification.basic.TrainModel.Options
getTrainingDataFile(File) - Method in class org.cleartk.ml.baseline.SingleOutcomeClassifierBuilder
getTrainingDataFile(File) - Method in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeClassifierBuilder
getTrainingDataFile(File) - Method in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
getTrainingDataFile(File) - Method in class org.cleartk.ml.liblinear.GenericLibLinearClassifierBuilder
getTrainingDataFile(File) - Method in class org.cleartk.ml.libsvm.GenericLibSvmClassifierBuilder
getTrainingDataFile(File) - Method in class org.cleartk.ml.libsvm.tk.TkLibSvmBooleanOutcomeClassifierBuilder
getTrainingDataFile(File) - Method in class org.cleartk.ml.mallet.grmm.GrmmClassifierBuilder
getTrainingDataFile(File) - Method in class org.cleartk.ml.mallet.MalletClassifierBuilder_ImplBase
getTrainingDataFile(File) - Method in class org.cleartk.ml.mallet.MalletCrfStringOutcomeClassifierBuilder
getTrainingDataFile(File) - Method in class org.cleartk.ml.opennlp.maxent.MaxentClassifierBuilder_ImplBase
getTrainingDataFile(File) - Method in class org.cleartk.ml.svmlight.SvmLightClassifierBuilder_ImplBase
getTrainingDataFile(File) - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeClassifierBuilder
getTrainingDataFile(File, int) - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeClassifierBuilder
getTrainingDataFile(File) - Method in class org.cleartk.ml.tksvmlight.TkSvmLightBooleanOutcomeClassifierBuilder
getTrainingDataFile(File) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifierBuilder
getTrainingDataFile(File, int) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifierBuilder: Get the training data file for a specific label.
getTrainingDataFile(File) - Method in class org.cleartk.ml.weka.WekaStringOutcomeClassifierBuilder
getTrainingDataName() - Method in class org.cleartk.ml.libsvm.GenericLibSvmClassifierBuilder
getTrainingDataName() - Method in class org.cleartk.ml.libsvm.LibSvmClassifierBuilder
getTrainingDirectory() - Method in class org.cleartk.timeml.util.CleartkInternalModelFactory
getTreebankDirectory() - Method in interface org.cleartk.examples.treebank.TreebankParsingExample.Options
getTreebankFileSuffixes() - Method in interface org.cleartk.examples.treebank.TreebankParsingExample.Options
getTreebankParse() - Method in class org.cleartk.util.treebank.TopTreebankNode
getTreebankParse() - Method in class org.cleartk.util.treebank.TreebankNode
getTrees() - Method in class org.cleartk.ml.tksvmlight.TreeFeatureVector: Get the trees from the feature vector (i.e.
getType(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: Returns the type of a constituent of some fragment of a treebank parse.
getType() - Method in class org.cleartk.util.treebank.TreebankNode
getTypeArgument(Class<T>, String, T) - Static method in class org.cleartk.util.ReflectionUtil
getTypeArguments(Class<?>) - Method in class org.cleartk.ml.baseline.SingleOutcomeClassifier
getTypeArguments(Class<?>) - Method in class org.cleartk.ml.viterbi.ViterbiClassifier
getTypeArguments(Class<?>) - Method in class org.cleartk.ml.viterbi.ViterbiDataWriter
getTypeArguments(Class<?>, Object) - Static method in class org.cleartk.util.ReflectionUtil: Try to find the instantiation of all of genericTypes type parameters in objs class.
getTypeArguments(Class<?>) - Method in interface org.cleartk.util.ReflectionUtil.TypeArgumentDelegator
getTypePath() - Method in class org.cleartk.ml.feature.TypePathFeature
getURI(JCas) - Static method in class org.cleartk.util.ViewUriUtil: Get the primary Uniform Resource Identifier for this JCas and all its views.
getUsageMessage() - Method in class org.cleartk.ml.mallet.factory.C45TrainerFactory
getUsageMessage() - Method in interface org.cleartk.ml.mallet.factory.ClassifierTrainerFactory
getUsageMessage() - Method in class org.cleartk.ml.mallet.factory.MaxEntTrainerFactory
getUsageMessage() - Method in class org.cleartk.ml.mallet.factory.McMaxEntTrainerFactory
getUsageMessage() - Method in class org.cleartk.ml.mallet.factory.NaiveBayesTrainerFactory
getUseCache() - Method in class org.cleartk.ml.tksvmlight.model.TreeKernel
getValue() - Method in class org.cleartk.ml.Feature
getValue() - Method in class org.cleartk.ml.feature.transform.TransformableFeature
getValue() - Method in exception org.cleartk.ml.util.featurevector.InvalidFeatureVectorValueException
getValue() - Method in class org.cleartk.util.treebank.TreebankNode
getValues() - Method in class org.cleartk.ml.feature.Counts
getValues() - Method in class org.cleartk.ml.opennlp.maxent.encoder.ContextValues
getWekaAttributeMap() - Method in class org.cleartk.ml.weka.WekaFeaturesEncoder
getWekaAttributes() - Method in class org.cleartk.ml.weka.WekaFeaturesEncoder
getWriterDescription(String) - Static method in class org.cleartk.examples.pos.ExamplePosAnnotator
getWriterDescription(File) - Method in class org.cleartk.timeml.util.CleartkInternalModelFactory
getWriterDescription() - Method in class org.cleartk.timeml.util.CleartkInternalModelFactory
getXMIDir() - Method in interface org.cleartk.summarization.SumBasic.Options
getXmiFile(JCas) - Method in class org.cleartk.util.ae.XmiWriter
getXmiFile(JCas) - Method in class org.cleartk.util.cr.linereader.LineReaderXmiWriter
getXml() - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
GOLD_VIEW - Static variable in interface org.cleartk.eval.EvaluationConstants
GOLD_VIEW_NAME - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation
GOLD_VIEW_NAME - Static variable in class org.cleartk.timeml.eval.TempEval2010Evaluation
GoldDocumentCategoryAnnotator - Class in org.cleartk.examples.documentclassification.advanced: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
GoldDocumentCategoryAnnotator() - Constructor for class org.cleartk.examples.documentclassification.advanced.GoldDocumentCategoryAnnotator
GrmmClassifier - Class in org.cleartk.ml.mallet.grmm: Copyright (c) 2010, University of Würzburg
All rights reserved.
GrmmClassifier(FeaturesEncoder<List<NameNumber>>, OutcomeEncoder<String[], String[]>, ACRF, String) - Constructor for class org.cleartk.ml.mallet.grmm.GrmmClassifier
GrmmClassifierBuilder - Class in org.cleartk.ml.mallet.grmm: Copyright (c) 2010, University of Würzburg
All rights reserved.
GrmmClassifierBuilder() - Constructor for class org.cleartk.ml.mallet.grmm.GrmmClassifierBuilder
GrmmDataWriter - Class in org.cleartk.ml.mallet.grmm: Copyright (c) 2010, University of Würzburg
All rights reserved.
GrmmDataWriter(File) - Constructor for class org.cleartk.ml.mallet.grmm.GrmmDataWriter

H

handleLine(JCas, File, File, String) - Method in class org.cleartk.util.cr.linereader.DefaultLineHandler
handleLine(JCas, File, File, String) - Method in interface org.cleartk.util.cr.linereader.LineHandler
handleLine(JCas, File, File, String) - Method in class org.cleartk.util.cr.linereader.SimpleLineHandler
hashCode() - Method in class org.cleartk.ml.Feature
hashCode() - Method in class org.cleartk.ml.Instance
hashCode() - Method in class org.cleartk.ml.util.featurevector.FeatureVector.Entry
hashCode() - Method in class org.cleartk.ml.util.featurevector.FeatureVector
hashCode() - Method in class org.cleartk.token.tokenizer.Token
hasNext() - Method in class org.cleartk.corpus.ace2005.Ace2005GoldReader
hasNext() - Method in class org.cleartk.corpus.conll2003.Conll2003GoldReader
hasNext() - Method in class org.cleartk.corpus.conll2005.Conll2005GoldReader
hasNext() - Method in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
hasNext() - Method in class org.cleartk.corpus.genia.pos.util.GeniaPosParser
hasNext() - Method in class org.cleartk.corpus.penntreebank.PennTreebankReader
hasNext() - Method in class org.cleartk.corpus.propbank.PropbankGoldReader
hasNext() - Method in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
hasNext() - Method in class org.cleartk.ml.feature.transform.InstanceStream.Iterator
hasNext() - Method in class org.cleartk.ml.mallet.InstanceListCreator.DataIterator
hasNext() - Method in class org.cleartk.util.cr.FilesCollectionReader
hasNext() - Method in class org.cleartk.util.cr.linereader.LineReader
hasNext() - Method in class org.cleartk.util.cr.UriCollectionReader
HeadWordExtractor - Class in org.cleartk.feature.syntax: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
HeadWordExtractor(FeatureExtractor1<TreebankNode>, boolean) - Constructor for class org.cleartk.feature.syntax.HeadWordExtractor
HeadWordExtractor(FeatureExtractor1<TreebankNode>) - Constructor for class org.cleartk.feature.syntax.HeadWordExtractor
height - Variable in class org.cleartk.corpus.propbank.util.PropbankNodeRelation
hyphenTag - Variable in class org.cleartk.corpus.propbank.util.Proplabel
HyphenUtil - Class in org.cleartk.ml.feature.util: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
HyphenUtil() - Constructor for class org.cleartk.ml.feature.util.HyphenUtil

I

idfMap - Variable in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor
incompatibleTypeParameterAndType(Object, String, Type, Class<?>) - Static method in exception org.cleartk.util.CleartkInitializationException
incompatibleTypeParameters(Object, String, Type, Object, String, Type) - Static method in exception org.cleartk.util.CleartkInitializationException
incTotalDocumentCount() - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor.IDFMap
index - Variable in class org.cleartk.berkeleyparser.DefaultOutputTypesHelper.TokenIndex
index - Variable in class org.cleartk.ml.util.featurevector.FeatureVector.Entry
inferPlainText(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: A treebank parse does not preserve whitespace information.
inflectionValue - Variable in class org.cleartk.corpus.propbank.util.Propbank
init(int, double, double) - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat
initExponents() - Method in class org.cleartk.ml.tksvmlight.model.TreeKernel
initialize(UimaContext) - Method in class org.cleartk.berkeleyparser.ParserAnnotator
initialize(UimaContext) - Method in class org.cleartk.berkeleyparser.ParserWrapper_ImplBase
initialize(UimaContext) - Method in class org.cleartk.clearnlp.DependencyParser_ImplBase
initialize(UimaContext) - Method in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
initialize(UimaContext) - Method in class org.cleartk.clearnlp.PosTagger_ImplBase
initialize(UimaContext) - Method in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
initialize(UimaContext) - Method in class org.cleartk.clearnlp.Tokenizer
initialize(UimaContext) - Method in class org.cleartk.clearnlp.Tokenizer_ImplBase
initialize(UimaContext) - Method in class org.cleartk.corpus.ace2005.Ace2005GoldAnnotator
initialize(UimaContext) - Method in class org.cleartk.corpus.ace2005.Ace2005GoldReader
initialize(UimaContext) - Method in class org.cleartk.corpus.ace2005.Ace2005Writer
initialize(UimaContext) - Method in class org.cleartk.corpus.conll2003.Conll2003GoldReader
initialize(UimaContext) - Method in class org.cleartk.corpus.conll2005.Conll2005GoldAnnotator
initialize(UimaContext) - Method in class org.cleartk.corpus.conll2005.Conll2005GoldReader
initialize(UimaContext) - Method in class org.cleartk.corpus.conll2005.Conll2005Writer
initialize(UimaContext) - Method in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
initialize(UimaContext) - Method in class org.cleartk.corpus.penntreebank.PennTreebankReader
initialize(UimaContext) - Method in class org.cleartk.corpus.penntreebank.TreebankGoldAnnotator
initialize(UimaContext) - Method in class org.cleartk.corpus.propbank.PropbankFormatWriter
initialize(UimaContext) - Method in class org.cleartk.corpus.propbank.PropbankGoldReader
initialize(UimaContext) - Method in class org.cleartk.corpus.timeml.PlainTextTlinkGoldAnnotator
initialize(UimaContext) - Method in class org.cleartk.corpus.timeml.TempEval2007Writer
initialize(UimaContext) - Method in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
initialize(UimaContext) - Method in class org.cleartk.corpus.timeml.TempEval2010Writer
initialize(UimaContext) - Method in class org.cleartk.corpus.timeml.TimeMlGoldAnnotator
initialize(UimaContext) - Method in class org.cleartk.corpus.timeml.TreebankAligningAnnotator
initialize(UimaContext) - Method in class org.cleartk.examples.chunking.NamedEntityChunker
initialize(UimaContext) - Method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
initialize(UimaContext) - Method in class org.cleartk.examples.documentclassification.basic.BasicDocumentClassificationAnnotator
initialize(UimaContext) - Method in class org.cleartk.examples.linewriter.Docs2Tokens.TokenAnnotationWriter
initialize(UimaContext) - Method in class org.cleartk.examples.pos.ExamplePosAnnotator
initialize(UimaContext) - Method in class org.cleartk.examples.pos.ExamplePosPlainTextWriter
initialize(UimaContext) - Method in class org.cleartk.maltparser.MaltParser
initialize(UimaContext) - Method in class org.cleartk.ml.CleartkAnnotator
initialize(UimaContext) - Method in class org.cleartk.ml.CleartkSequenceAnnotator
initialize(UimaContext) - Method in class org.cleartk.ml.jar.DirectoryDataWriterFactory
initialize(UimaContext) - Method in class org.cleartk.ml.jar.EncodingDirectoryDataWriterFactory
initialize(UimaContext) - Method in class org.cleartk.ml.jar.GenericJarClassifierFactory
initialize(UimaContext) - Method in class org.cleartk.ml.multi.CleartkMultiAnnotator
initialize(UimaContext) - Method in class org.cleartk.ml.viterbi.DefaultOutcomeFeatureExtractor
initialize(UimaContext) - Method in interface org.cleartk.ml.viterbi.OutcomeFeatureExtractor
initialize(UimaContext) - Method in class org.cleartk.ml.viterbi.ViterbiClassifier
initialize(UimaContext) - Method in class org.cleartk.ml.viterbi.ViterbiDataWriterFactory
initialize(UimaContext) - Method in class org.cleartk.opennlp.tools.parser.ParserWrapper_ImplBase
initialize(UimaContext) - Method in class org.cleartk.opennlp.tools.ParserAnnotator
initialize(UimaContext) - Method in class org.cleartk.opennlp.tools.PosTaggerAnnotator
initialize(UimaContext) - Method in class org.cleartk.opennlp.tools.SentenceAnnotator
initialize(UimaContext) - Method in class org.cleartk.snowball.DefaultSnowballStemmer
initialize(UimaContext) - Method in class org.cleartk.snowball.SnowballStemmer
initialize(UimaContext) - Method in class org.cleartk.stanford.corenlp.StanfordCoreNlpAnnotator
initialize(UimaContext) - Method in class org.cleartk.summarization.SumBasicAnnotator
initialize(UimaContext) - Method in class org.cleartk.summarization.SummarySentenceWriterAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.eval.TempEval2013Evaluation.UseInferredTlinks
initialize(UimaContext) - Method in class org.cleartk.timeml.event.EventAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.event.EventAspectAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.event.EventAttributeAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.event.EventClassAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.event.EventModalityAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.event.EventPolarityAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.event.EventTenseAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.time.TimeAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.time.TimeTypeAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.tlink.TemporalLinkEventToDocumentCreationTimeAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.tlink.TemporalLinkEventToSameSentenceTimeAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.tlink.TemporalLinkEventToSubordinatedEventAnnotator
initialize(UimaContext) - Method in class org.cleartk.timeml.tlink.TemporalLinkMainEventToNextSentenceMainEventAnnotator
initialize(UimaContext) - Method in class org.cleartk.token.breakit.BreakIteratorAnnotator
initialize(UimaContext) - Method in class org.cleartk.token.pos.impl.DefaultFeatureExtractor
initialize(UimaContext) - Method in class org.cleartk.token.pos.PosAnnotator
initialize(UimaContext) - Method in class org.cleartk.token.pos.TokenPosWriter
initialize(UimaContext) - Method in class org.cleartk.token.tokenizer.TokenAnnotator
initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.annotation.CoveredTextAnnotationWriter
initialize(UimaContext) - Method in interface org.cleartk.util.ae.linewriter.AnnotationWriter
initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.block.BlankLineBlockWriter
initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.block.DocumentIdBlockWriter
initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.block.DoNothingBlockWriter
initialize(UimaContext) - Method in interface org.cleartk.util.ae.linewriter.BlockWriter
initialize(UimaContext) - Method in class org.cleartk.util.ae.linewriter.LineWriter
initialize(UimaContext) - Method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
initialize(UimaContext) - Method in class org.cleartk.util.ae.PlainTextWriter
initialize(UimaContext) - Method in class org.cleartk.util.cr.FilesCollectionReader
initialize(UimaContext) - Method in class org.cleartk.util.cr.linereader.DefaultLineHandler
initialize(UimaContext) - Method in interface org.cleartk.util.cr.linereader.LineHandler
initialize(UimaContext) - Method in class org.cleartk.util.cr.linereader.LineReader
initialize(UimaContext) - Method in class org.cleartk.util.cr.linereader.SimpleLineHandler
initialize(UimaContext) - Method in class org.cleartk.util.cr.UriCollectionReader
initialize(UimaContext) - Method in class org.cleartk.util.cr.XReader
initializeTypes(JCas) - Method in class org.cleartk.token.pos.PosAnnotator
initTerminalNodes(TopTreebankNode, JCas) - Static method in class org.cleartk.corpus.penntreebank.TreebankNodeConverter
initTerminalNodes() - Method in class org.cleartk.util.treebank.TopTreebankNode
innerProduct(FeatureVector) - Method in class org.cleartk.ml.util.featurevector.FeatureVector
innerProduct(FeatureVector) - Method in class org.cleartk.ml.util.featurevector.SparseFeatureVector
InputStreamHandler<T> - Class in org.cleartk.util: Copyright (c) 2011-2012, Technische Universität Darmstadt
All rights reserved.
InputTypesHelper<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation> - Class in org.cleartk.berkeleyparser: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
InputTypesHelper() - Constructor for class org.cleartk.berkeleyparser.InputTypesHelper
inputTypesHelper - Variable in class org.cleartk.berkeleyparser.ParserWrapper_ImplBase
InputTypesHelper<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation> - Class in org.cleartk.opennlp.tools.parser: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
InputTypesHelper() - Constructor for class org.cleartk.opennlp.tools.parser.InputTypesHelper
inputTypesHelper - Variable in class org.cleartk.opennlp.tools.parser.ParserWrapper_ImplBase
inputTypesHelperClassName - Variable in class org.cleartk.berkeleyparser.ParserWrapper_ImplBase
inputTypesHelperClassName - Variable in class org.cleartk.opennlp.tools.parser.ParserWrapper_ImplBase
Instance<OUTCOME_TYPE> - Class in org.cleartk.ml: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Instance() - Constructor for class org.cleartk.ml.Instance: Create a new ClassifierInstance with an empty set of features and a null label.
Instance(OUTCOME_TYPE) - Constructor for class org.cleartk.ml.Instance
Instance(OUTCOME_TYPE, Collection<Feature>) - Constructor for class org.cleartk.ml.Instance
Instance(Collection<Feature>) - Constructor for class org.cleartk.ml.Instance
InstanceDataWriter<OUTCOME_T> - Class in org.cleartk.ml.feature.transform: Copyright (c) 2011-2012, Regents of the University of Colorado
All rights reserved.
InstanceDataWriter(File) - Constructor for class org.cleartk.ml.feature.transform.InstanceDataWriter
instanceDataWriter - Variable in class org.cleartk.summarization.classifier.SummarizationDataWriter
InstanceFactory - Class in org.cleartk.ml.util: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
InstanceFactory() - Constructor for class org.cleartk.ml.util.InstanceFactory
InstanceListCreator - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
InstanceListCreator() - Constructor for class org.cleartk.ml.mallet.InstanceListCreator
InstanceListCreator.DataIterator - Class in org.cleartk.ml.mallet: This DataIterator was cut-n-paste from cc.mallet.pipe.iterator.CsvIterator and modified
InstanceListCreator.DataIterator(Reader) - Constructor for class org.cleartk.ml.mallet.InstanceListCreator.DataIterator
Instances - Class in org.cleartk.ml: Provides static methods for working with Instance objects.
Instances() - Constructor for class org.cleartk.ml.Instances
instances - Variable in class org.cleartk.ml.util.PublicFieldDataWriter
instances - Variable in class org.cleartk.ml.util.PublicFieldSequenceDataWriter
INSTANCES_OUTPUT_FILENAME - Static variable in class org.cleartk.ml.feature.transform.InstanceDataWriter
InstanceStream<OUTCOME_T> - Class in org.cleartk.ml.feature.transform: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
InstanceStream(URI) - Constructor for class org.cleartk.ml.feature.transform.InstanceStream
InstanceStream.Iterator<OUTCOME_T> - Class in org.cleartk.ml.feature.transform
InstanceStream.Iterator(URI) - Constructor for class org.cleartk.ml.feature.transform.InstanceStream.Iterator
InstanceStream.Terminator<OUTCOME_T> - Class in org.cleartk.ml.feature.transform
InstanceStream.Terminator() - Constructor for class org.cleartk.ml.feature.transform.InstanceStream.Terminator
invalidFeatureVectorValue(Throwable, int, double) - Static method in exception org.cleartk.ml.encoder.CleartkEncoderException
invalidFeatureVectorValue(int, double) - Static method in exception org.cleartk.ml.encoder.CleartkEncoderException
InvalidFeatureVectorValueException - Exception in org.cleartk.ml.util.featurevector: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
InvalidFeatureVectorValueException(int, double) - Constructor for exception org.cleartk.ml.util.featurevector.InvalidFeatureVectorValueException
invalidParameterValueSelectFrom(String, List<?>, Object) - Static method in exception org.cleartk.util.CleartkInitializationException
invalidTypePath(String, Type) - Static method in exception org.cleartk.ml.feature.extractor.CleartkExtractorException
inverse() - Method in class org.cleartk.util.collection.CompressedStringBiMap
IoChunking<SUB_CHUNK_TYPE extends Annotation,CHUNK_TYPE extends Annotation> - Class in org.cleartk.ml.chunking: Chunking with Inside-Outside labels
Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
IoChunking(Class<? extends SUB_CHUNK_TYPE>, Class<? extends CHUNK_TYPE>) - Constructor for class org.cleartk.ml.chunking.IoChunking
IoChunking(Class<? extends SUB_CHUNK_TYPE>, Class<? extends CHUNK_TYPE>, String) - Constructor for class org.cleartk.ml.chunking.IoChunking
IoUtil - Class in org.cleartk.util: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
IoUtil() - Constructor for class org.cleartk.util.IoUtil
isAllPaths() - Method in class org.cleartk.ml.feature.extractor.TypePathExtractor
isAllUppercase(String) - Static method in class org.cleartk.ml.feature.util.CaseUtil
isAllUppercase(String, Locale) - Static method in class org.cleartk.ml.feature.util.CaseUtil
isAllValues() - Method in class org.cleartk.ml.feature.extractor.TypePathExtractor
isAssignableFrom(Type, Type) - Static method in class org.cleartk.util.ReflectionUtil
isCompressFeatures() - Method in class org.cleartk.ml.encoder.features.NameNumberFeaturesEncoder
isDigits(String) - Static method in class org.cleartk.ml.feature.util.NumericTypeUtil
isEndOfChunk(char, String, char, String) - Method in class org.cleartk.ml.chunking.BiesoChunking
isEndOfChunk(char, String, char, String) - Method in class org.cleartk.ml.chunking.BioChunking
isEndOfChunk(char, String, char, String) - Method in class org.cleartk.ml.chunking.Chunking_ImplBase: Determines whether the current outcome represents the end of a chunk.
isEndOfChunk(char, String, char, String) - Method in class org.cleartk.ml.chunking.IoChunking
isInitialUppercase(String) - Static method in class org.cleartk.ml.feature.util.CaseUtil
isInitialUppercase(String, Locale) - Static method in class org.cleartk.ml.feature.util.CaseUtil
isLeaf() - Method in class org.cleartk.util.treebank.TreebankNode
isPartial - Variable in class org.cleartk.feature.syntax.SyntacticPathExtractor
isTrained - Variable in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor
isTrained - Variable in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor
isTraining() - Method in class org.cleartk.ml.CleartkAnnotator
isTraining() - Method in class org.cleartk.ml.CleartkSequenceAnnotator
isTraining() - Method in class org.cleartk.ml.multi.CleartkMultiAnnotator
isTransformable(Feature) - Method in class org.cleartk.ml.feature.transform.OneToOneTrainableExtractor_ImplBase
isTransformable(Feature) - Method in class org.cleartk.ml.feature.transform.TrainableExtractor_ImplBase
isUniqueValues() - Method in class org.cleartk.ml.feature.extractor.TypePathExtractor
isValidPath(Type, String, JCas) - Static method in class org.cleartk.ml.feature.extractor.TypePathExtractor
isValidType(Type, TypeSystem) - Static method in class org.cleartk.ml.feature.extractor.TypePathExtractor
iterator() - Method in class org.cleartk.corpus.penntreebank.ListSpecification
iterator() - Method in class org.cleartk.corpus.penntreebank.RangeSpecification
iterator() - Method in class org.cleartk.ml.feature.transform.InstanceStream
iterator() - Method in class org.cleartk.ml.util.featurevector.ArrayFeatureVector
iterator() - Method in class org.cleartk.ml.util.featurevector.FeatureVector: Gives an iterator over the non-zero features.
iterator() - Method in class org.cleartk.ml.util.featurevector.SparseFeatureVector

J

JarClassifierBuilder<CLASSIFIER_TYPE> - Class in org.cleartk.ml.jar: Superclass for builders which package classifiers as jar files.
JarClassifierBuilder() - Constructor for class org.cleartk.ml.jar.JarClassifierBuilder: Creates a new classifier builder with a default manifest.
JarClassifierFactory<OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
JarClassifierFactory() - Constructor for class org.cleartk.ml.jar.JarClassifierFactory
JarStreams - Class in org.cleartk.ml.jar: Utility class for working with JarInputStream and JarOutputStream objects.
JarStreams() - Constructor for class org.cleartk.ml.jar.JarStreams
jCas - Variable in class org.cleartk.test.util.CleartkTestBase

K

Kernel - Class in org.cleartk.ml.svmlight.model: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Kernel() - Constructor for class org.cleartk.ml.svmlight.model.Kernel

L

l2Norm() - Method in class org.cleartk.ml.util.featurevector.FeatureVector
label - Variable in class org.cleartk.corpus.propbank.util.Proplabel
LAMBDA_DEFAULT - Static variable in class org.cleartk.ml.tksvmlight.model.TreeKernel
LEAF_NODE_REGEX - Static variable in class org.cleartk.util.treebank.TreebankFormatParser: used to identify tokens in Penn Treebank labeled constituents.
LEFTOF - Static variable in class org.cleartk.ml.feature.extractor.RelativePositionExtractor
Levenshtein - Class in org.cleartk.util.similarity: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
Levenshtein() - Constructor for class org.cleartk.util.similarity.Levenshtein
LibLinearBooleanOutcomeClassifier - Class in org.cleartk.ml.liblinear: Copyright (c) 2007-2013, Regents of the University of Colorado
All rights reserved.
LibLinearBooleanOutcomeClassifier(FeaturesEncoder<FeatureNode[]>, OutcomeEncoder<Boolean, Integer>, Model) - Constructor for class org.cleartk.ml.liblinear.LibLinearBooleanOutcomeClassifier
LibLinearBooleanOutcomeClassifierBuilder - Class in org.cleartk.ml.liblinear: Copyright (c) 2007-2013, Regents of the University of Colorado
All rights reserved.
LibLinearBooleanOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.liblinear.LibLinearBooleanOutcomeClassifierBuilder
LibLinearBooleanOutcomeDataWriter - Class in org.cleartk.ml.liblinear: Copyright (c) 2007-2013, Regents of the University of Colorado
All rights reserved.
LibLinearBooleanOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.liblinear.LibLinearBooleanOutcomeDataWriter
LibLinearStringOutcomeClassifier - Class in org.cleartk.ml.liblinear: Copyright (c) 2007-2013, Regents of the University of Colorado
All rights reserved.
LibLinearStringOutcomeClassifier(FeaturesEncoder<FeatureNode[]>, OutcomeEncoder<String, Integer>, Model) - Constructor for class org.cleartk.ml.liblinear.LibLinearStringOutcomeClassifier
LibLinearStringOutcomeClassifierBuilder - Class in org.cleartk.ml.liblinear: Copyright (c) 2007-2013, Regents of the University of Colorado
All rights reserved.
LibLinearStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.liblinear.LibLinearStringOutcomeClassifierBuilder
LibLinearStringOutcomeDataWriter - Class in org.cleartk.ml.liblinear: Copyright (c) 2007-2013, Regents of the University of Colorado
All rights reserved.
LibLinearStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.liblinear.LibLinearStringOutcomeDataWriter
LibSvmBooleanOutcomeClassifier - Class in org.cleartk.ml.libsvm: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LibSvmBooleanOutcomeClassifier(FeaturesEncoder<FeatureVector>, OutcomeEncoder<Boolean, Boolean>, svm_model) - Constructor for class org.cleartk.ml.libsvm.LibSvmBooleanOutcomeClassifier
LibSvmBooleanOutcomeClassifierBuilder - Class in org.cleartk.ml.libsvm: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LibSvmBooleanOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.libsvm.LibSvmBooleanOutcomeClassifierBuilder
LibSvmBooleanOutcomeDataWriter - Class in org.cleartk.ml.libsvm: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
LibSvmBooleanOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.libsvm.LibSvmBooleanOutcomeDataWriter
LibSvmClassifier<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.libsvm: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LibSvmClassifier(FeaturesEncoder<FeatureVector>, OutcomeEncoder<OUTCOME_TYPE, ENCODED_OUTCOME_TYPE>, svm_model) - Constructor for class org.cleartk.ml.libsvm.LibSvmClassifier
LibSvmClassifierBuilder<CLASSIFIER_TYPE extends LibSvmClassifier<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE,MODEL_TYPE> - Class in org.cleartk.ml.libsvm: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
LibSvmClassifierBuilder() - Constructor for class org.cleartk.ml.libsvm.LibSvmClassifierBuilder
LibSvmDataWriter<CLASSIFIER_BUILDER_TYPE extends GenericLibSvmClassifierBuilder<? extends Classifier<OUTCOME_TYPE>,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE,MODEL_TYPE>,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE,MODEL_TYPE> - Class in org.cleartk.ml.libsvm: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
LibSvmDataWriter(File) - Constructor for class org.cleartk.ml.libsvm.LibSvmDataWriter
LibSvmStringOutcomeClassifier - Class in org.cleartk.ml.libsvm: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LibSvmStringOutcomeClassifier(FeaturesEncoder<FeatureVector>, OutcomeEncoder<String, Integer>, svm_model) - Constructor for class org.cleartk.ml.libsvm.LibSvmStringOutcomeClassifier
LibSvmStringOutcomeClassifierBuilder - Class in org.cleartk.ml.libsvm: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LibSvmStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.libsvm.LibSvmStringOutcomeClassifierBuilder
LibSvmStringOutcomeDataWriter - Class in org.cleartk.ml.libsvm: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
LibSvmStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.libsvm.LibSvmStringOutcomeDataWriter
LibSvmTrain - Class in org.cleartk.ml.libsvm.util
LibSvmTrain() - Constructor for class org.cleartk.ml.libsvm.util.LibSvmTrain
LicenseTestUtil - Class in org.cleartk.test.util: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
LicenseTestUtil() - Constructor for class org.cleartk.test.util.LicenseTestUtil
LinearKernel - Class in org.cleartk.ml.svmlight.model: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LinearKernel() - Constructor for class org.cleartk.ml.svmlight.model.LinearKernel
LineHandler - Interface in org.cleartk.util.cr.linereader: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LineReader - Class in org.cleartk.util.cr.linereader: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LineReader() - Constructor for class org.cleartk.util.cr.linereader.LineReader
LineReaderXmiWriter - Class in org.cleartk.util.cr.linereader: This is a simple annotator for writing out XMI files, used by the parsing examples.
LineReaderXmiWriter() - Constructor for class org.cleartk.util.cr.linereader.LineReaderXmiWriter
LineWriter<ANNOTATION_TYPE extends Annotation,BLOCK_TYPE extends Annotation> - Class in org.cleartk.util.ae.linewriter: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
LineWriter() - Constructor for class org.cleartk.util.ae.linewriter.LineWriter
LinWengPlatt - Class in org.cleartk.ml.sigmoid: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
LinWengPlatt() - Constructor for class org.cleartk.ml.sigmoid.LinWengPlatt
LinWengPlatt.ConvergenceFailure - Exception in org.cleartk.ml.sigmoid
LinWengPlatt.ConvergenceFailure(String) - Constructor for exception org.cleartk.ml.sigmoid.LinWengPlatt.ConvergenceFailure
ListSpecification - Class in org.cleartk.corpus.penntreebank: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
ListSpecification(String) - Constructor for class org.cleartk.corpus.penntreebank.ListSpecification
load(URI) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor
load(URI) - Method in class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor
load(URI) - Method in class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor
load(URI) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor.IDFMap
load(URI) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor
load(URI) - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor
load(URI) - Method in interface org.cleartk.ml.feature.transform.TrainableExtractor: Loads statistics from location URI
load(URI) - Method in class org.cleartk.summarization.SumBasicModel.TermFrequencyMap
loadClassifier(InputStream) - Method in class org.cleartk.ml.jar.JarClassifierBuilder: Load a classifier packaged by JarClassifierBuilder.packageClassifier(File) from an InputStream.
loadClassifierFromTrainingDirectory(File) - Method in class org.cleartk.ml.jar.JarClassifierBuilder: Load a classifier packaged by JarClassifierBuilder.packageClassifier(File) from the jar file in the training directory.
loadFromDirectory(File) - Static method in class org.cleartk.ml.feature.transform.InstanceStream
loadFromURI(URI) - Static method in class org.cleartk.ml.feature.transform.InstanceStream
loadModel(InputStream) - Method in class org.cleartk.ml.libsvm.GenericLibSvmClassifierBuilder
loadModel(InputStream) - Method in class org.cleartk.ml.libsvm.LibSvmClassifierBuilder
loadModel(InputStream) - Method in class org.cleartk.summarization.classifier.SumBasicClassifierBuilder
loadModel(InputStream) - Method in class org.cleartk.summarization.classifier.SummarizationClassifierBuilder
logger - Variable in class org.cleartk.test.util.CleartkTestBase: A Logger instance associated with the class, intended for use by subclasses.
LONG_TEST_MESSAGE - Static variable in class org.cleartk.test.util.CleartkTestBase: A message indicating that the current test runs for a long time, and giving instructions how to skip it.
LONG_TESTS_PROPERTY_VALUE - Static variable in class org.cleartk.test.util.CleartkTestBase: Value for the CleartkTestBase.SKIP_TESTS_PROPERTY property that indicates that long-running tests should be disabled.
LOOKUP_FILE_NAME - Static variable in class org.cleartk.ml.encoder.features.FeatureVectorFeaturesEncoder
LOOKUP_FILE_NAME - Static variable in class org.cleartk.ml.encoder.features.NameNumberFeaturesEncoder
LOOKUP_FILE_NAME - Static variable in class org.cleartk.ml.encoder.outcome.StringToIntegerOutcomeEncoder
LowerCaseFeatureFunction - Class in org.cleartk.ml.feature.function: Copyright (c) 2007-2012, Regents of the University of Colorado
All rights reserved.
LowerCaseFeatureFunction() - Constructor for class org.cleartk.ml.feature.function.LowerCaseFeatureFunction

M

magnitude(Map<String, Double>) - Static method in class org.cleartk.ml.feature.transform.extractor.CosineSimilarity
main(String[]) - Static method in class org.cleartk.berkeleyparser.ParserAnnotator
main(String[]) - Static method in class org.cleartk.corpus.genia.pos.Genia2PlainText
main(String[]) - Static method in class org.cleartk.corpus.genia.pos.util.GeniaPosParser
main(String[]) - Static method in class org.cleartk.eval.util.ConfusionMatrix
main(String[]) - Static method in class org.cleartk.examples.chunking.EvaluateNamedEntityChunker
main(String[]) - Static method in class org.cleartk.examples.chunking.RunNamedEntityChunker
main(String[]) - Static method in class org.cleartk.examples.chunking.TrainNamedEntityChunker
main(String[]) - Static method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation
main(String[]) - Static method in class org.cleartk.examples.documentclassification.advanced.RunModel
main(String[]) - Static method in class org.cleartk.examples.documentclassification.advanced.TrainModel
main(String[]) - Static method in class org.cleartk.examples.documentclassification.basic.RunModel
main(String[]) - Static method in class org.cleartk.examples.documentclassification.basic.TrainModel
main(String[]) - Static method in class org.cleartk.examples.linewriter.Docs2Sentences
main(String[]) - Static method in class org.cleartk.examples.linewriter.Docs2Tokens
main(String[]) - Static method in class org.cleartk.examples.parser.ParserExample
main(String...) - Static method in class org.cleartk.examples.pos.BuildTestExamplePosModel
main(String[]) - Static method in class org.cleartk.examples.pos.RunExamplePosAnnotator
main(String[]) - Static method in class org.cleartk.examples.treebank.TreebankParsingExample
main(String...) - Static method in class org.cleartk.ml.jar.BuildJar
main(File, String...) - Static method in class org.cleartk.ml.jar.Train: Trains a classifier in the given directory.
main(String...) - Static method in class org.cleartk.ml.jar.Train
main(String[]) - Static method in class org.cleartk.ml.libsvm.util.LibSvmTrain
main(String[]) - Static method in class org.cleartk.ml.mallet.InstanceListCreator
main(String[]) - Static method in class org.cleartk.ml.weka.WekaTest
main(String[]) - Static method in class org.cleartk.summarization.SumBasic
main(String[]) - Static method in class org.cleartk.timeml.eval.TempEval2010Main
main(String[]) - Static method in class org.cleartk.timeml.eval.TempEval2010TaskAAttributes
main(String[]) - Static method in class org.cleartk.timeml.eval.TempEval2010TaskAExtents
main(String[]) - Static method in class org.cleartk.timeml.eval.TempEval2010TaskBAttributes
main(String[]) - Static method in class org.cleartk.timeml.eval.TempEval2010TaskBExtents
main(String[]) - Static method in class org.cleartk.timeml.eval.TempEval2010TaskC
main(String[]) - Static method in class org.cleartk.timeml.eval.TempEval2010TaskD
main(String[]) - Static method in class org.cleartk.timeml.eval.TempEval2010TaskE
main(String[]) - Static method in class org.cleartk.timeml.eval.TempEval2010TaskF
main(String[]) - Static method in class org.cleartk.timeml.eval.TempEval2013Evaluation
main(String...) - Static method in class org.cleartk.timeml.TimeMlAnnotate
main(String[]) - Static method in class org.cleartk.timeml.tlink.VerbClauseTemporalAnnotate
main(String[]) - Static method in class org.cleartk.timeml.tlink.VerbClauseTemporalTrain
MalletBooleanOutcomeClassifier - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletBooleanOutcomeClassifier(FeaturesEncoder<List<NameNumber>>, OutcomeEncoder<Boolean, String>, Classifier) - Constructor for class org.cleartk.ml.mallet.MalletBooleanOutcomeClassifier
MalletBooleanOutcomeClassifierBuilder - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletBooleanOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.mallet.MalletBooleanOutcomeClassifierBuilder
MalletBooleanOutcomeDataWriter - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletBooleanOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.mallet.MalletBooleanOutcomeDataWriter
MalletClassifier_ImplBase<OUTCOME_TYPE> - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletClassifier_ImplBase(FeaturesEncoder<List<NameNumber>>, OutcomeEncoder<OUTCOME_TYPE, String>, Classifier) - Constructor for class org.cleartk.ml.mallet.MalletClassifier_ImplBase
MalletClassifierBuilder_ImplBase<CLASSIFIER_TYPE extends MalletClassifier_ImplBase<OUTCOME_TYPE>,OUTCOME_TYPE> - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletClassifierBuilder_ImplBase() - Constructor for class org.cleartk.ml.mallet.MalletClassifierBuilder_ImplBase
MalletCrfStringOutcomeClassifier - Class in org.cleartk.ml.mallet: This classifier provides an interface to the Mallet Conditional Random Field (CRF) tagger.
MalletCrfStringOutcomeClassifier(FeaturesEncoder<List<NameNumber>>, OutcomeEncoder<String, String>, Transducer) - Constructor for class org.cleartk.ml.mallet.MalletCrfStringOutcomeClassifier
MalletCrfStringOutcomeClassifierBuilder - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletCrfStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.mallet.MalletCrfStringOutcomeClassifierBuilder
MalletCrfStringOutcomeDataWriter - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletCrfStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.mallet.MalletCrfStringOutcomeDataWriter
MalletDataWriter_ImplBase<CLASSIFIER_BUILDER_TYPE extends MalletClassifierBuilder_ImplBase<? extends MalletClassifier_ImplBase<OUTCOME_TYPE>,OUTCOME_TYPE>,OUTCOME_TYPE> - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletDataWriter_ImplBase(File) - Constructor for class org.cleartk.ml.mallet.MalletDataWriter_ImplBase
MalletStringOutcomeClassifier - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletStringOutcomeClassifier(FeaturesEncoder<List<NameNumber>>, OutcomeEncoder<String, String>, Classifier) - Constructor for class org.cleartk.ml.mallet.MalletStringOutcomeClassifier
MalletStringOutcomeClassifierBuilder - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.mallet.MalletStringOutcomeClassifierBuilder
MalletStringOutcomeDataWriter - Class in org.cleartk.ml.mallet: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MalletStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.mallet.MalletStringOutcomeDataWriter
MaltParser - Class in org.cleartk.maltparser: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
MaltParser() - Constructor for class org.cleartk.maltparser.MaltParser
manifest - Variable in class org.cleartk.ml.jar.JarClassifierBuilder: The manifest associated with this classifier builder.
MascGoldAnnotator - Class in org.cleartk.examples.chunking.util: This class reads MASC (http://www.anc.org/MASC) annotations into the CAS.
MascGoldAnnotator() - Constructor for class org.cleartk.examples.chunking.util.MascGoldAnnotator
max() - Method in class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor.MinMaxRunningStat
MAX_CHILDREN - Static variable in class org.cleartk.ml.tksvmlight.model.TreeKernel
MaxentBooleanOutcomeClassifier - Class in org.cleartk.ml.opennlp.maxent: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
MaxentBooleanOutcomeClassifier(FeaturesEncoder<ContextValues>, OutcomeEncoder<Boolean, String>, MaxentModel) - Constructor for class org.cleartk.ml.opennlp.maxent.MaxentBooleanOutcomeClassifier
MaxentBooleanOutcomeClassifierBuilder - Class in org.cleartk.ml.opennlp.maxent: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
MaxentBooleanOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.opennlp.maxent.MaxentBooleanOutcomeClassifierBuilder
MaxentBooleanOutcomeDataWriter - Class in org.cleartk.ml.opennlp.maxent: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
MaxentBooleanOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.opennlp.maxent.MaxentBooleanOutcomeDataWriter
MaxentClassifier_ImplBase<OUTCOME_TYPE> - Class in org.cleartk.ml.opennlp.maxent: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
MaxentClassifier_ImplBase(FeaturesEncoder<ContextValues>, OutcomeEncoder<OUTCOME_TYPE, String>, MaxentModel) - Constructor for class org.cleartk.ml.opennlp.maxent.MaxentClassifier_ImplBase
MaxentClassifierBuilder_ImplBase<CLASSIFIER_TYPE extends MaxentClassifier_ImplBase<OUTCOME_TYPE>,OUTCOME_TYPE> - Class in org.cleartk.ml.opennlp.maxent: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
MaxentClassifierBuilder_ImplBase() - Constructor for class org.cleartk.ml.opennlp.maxent.MaxentClassifierBuilder_ImplBase
MaxentDataWriter_ImplBase<CLASSIFIER_BUILDER_TYPE extends MaxentClassifierBuilder_ImplBase<? extends MaxentClassifier_ImplBase<OUTCOME_TYPE>,OUTCOME_TYPE>,OUTCOME_TYPE> - Class in org.cleartk.ml.opennlp.maxent: Copyright (c) 2007-2013, Regents of the University of Colorado
All rights reserved.
MaxentDataWriter_ImplBase(File) - Constructor for class org.cleartk.ml.opennlp.maxent.MaxentDataWriter_ImplBase
MaxentStringOutcomeClassifier - Class in org.cleartk.ml.opennlp.maxent: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
MaxentStringOutcomeClassifier(FeaturesEncoder<ContextValues>, OutcomeEncoder<String, String>, MaxentModel) - Constructor for class org.cleartk.ml.opennlp.maxent.MaxentStringOutcomeClassifier
MaxentStringOutcomeClassifierBuilder - Class in org.cleartk.ml.opennlp.maxent: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
MaxentStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.opennlp.maxent.MaxentStringOutcomeClassifierBuilder
MaxentStringOutcomeDataWriter - Class in org.cleartk.ml.opennlp.maxent: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
MaxentStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.opennlp.maxent.MaxentStringOutcomeDataWriter
MaxEntTrainerFactory - Class in org.cleartk.ml.mallet.factory: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
MaxEntTrainerFactory() - Constructor for class org.cleartk.ml.mallet.factory.MaxEntTrainerFactory
McMaxEntTrainerFactory - Class in org.cleartk.ml.mallet.factory: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
McMaxEntTrainerFactory() - Constructor for class org.cleartk.ml.mallet.factory.McMaxEntTrainerFactory
mean - Variable in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanStddevTuple
mean() - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat
MeanValueClassifierBuilder - Class in org.cleartk.ml.baseline: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
MeanValueClassifierBuilder() - Constructor for class org.cleartk.ml.baseline.MeanValueClassifierBuilder
MeanValueDataWriter - Class in org.cleartk.ml.baseline: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
MeanValueDataWriter(File) - Constructor for class org.cleartk.ml.baseline.MeanValueDataWriter
min() - Method in class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor.MinMaxRunningStat
MINMAX_EXTRACTOR_KEY - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
MinMaxNormalizationExtractor<OUTCOME_T,FOCUS_T extends Annotation> - Class in org.cleartk.ml.feature.transform.extractor: Scales features extracted by its subextractor to range 0-1, by scaling by the minimum and maximum values
MinMaxNormalizationExtractor(String) - Constructor for class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor
MinMaxNormalizationExtractor(String, FeatureExtractor1<FOCUS_T>) - Constructor for class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor
MinMaxNormalizationExtractor.MinMaxRunningStat - Class in org.cleartk.ml.feature.transform.extractor
MinMaxNormalizationExtractor.MinMaxRunningStat() - Constructor for class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor.MinMaxRunningStat
minmaxUri - Variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
model - Variable in class org.cleartk.ml.liblinear.GenericLibLinearClassifierBuilder
model - Variable in class org.cleartk.ml.libsvm.GenericLibSvmClassifierBuilder
model - Variable in class org.cleartk.ml.libsvm.LibSvmClassifier
model - Variable in class org.cleartk.ml.opennlp.maxent.MaxentClassifier_ImplBase
model - Variable in class org.cleartk.ml.opennlp.maxent.MaxentClassifierBuilder_ImplBase
model - Variable in class org.cleartk.ml.svmlight.SvmLightClassifier_ImplBase
model - Variable in class org.cleartk.ml.svmlight.SvmLightClassifierBuilder_ImplBase
model - Variable in class org.cleartk.summarization.classifier.SummarizationClassifier
model - Variable in class org.cleartk.summarization.classifier.SummarizationClassifierBuilder
MODEL_NAME - Variable in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeClassifierBuilder
MODEL_NAME - Static variable in class org.cleartk.summarization.SumBasicModel
ModelError - Exception in org.cleartk.ml.svmlight.model: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
ModelError() - Constructor for exception org.cleartk.ml.svmlight.model.ModelError
modelFactory - Variable in class org.cleartk.timeml.eval.ModelInfo
ModelInfo<ANNOTATION_TYPE extends TOP> - Class in org.cleartk.timeml.eval: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
ModelInfo(Class<ANNOTATION_TYPE>, String, Function<ANNOTATION_TYPE, ? extends Object>, CleartkInternalModelFactory, String[]) - Constructor for class org.cleartk.timeml.eval.ModelInfo
models - Variable in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifierBuilder
moreThanOneName(String, String) - Static method in exception org.cleartk.ml.feature.extractor.CleartkExtractorException
MostFrequentBooleanClassifierBuilder - Class in org.cleartk.ml.baseline: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
MostFrequentBooleanClassifierBuilder() - Constructor for class org.cleartk.ml.baseline.MostFrequentBooleanClassifierBuilder
MostFrequentBooleanDataWriter - Class in org.cleartk.ml.baseline: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
MostFrequentBooleanDataWriter(File) - Constructor for class org.cleartk.ml.baseline.MostFrequentBooleanDataWriter
MostFrequentStringClassifierBuilder - Class in org.cleartk.ml.baseline: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
MostFrequentStringClassifierBuilder() - Constructor for class org.cleartk.ml.baseline.MostFrequentStringClassifierBuilder
MostFrequentStringDataWriter - Class in org.cleartk.ml.baseline
MostFrequentStringDataWriter(File) - Constructor for class org.cleartk.ml.baseline.MostFrequentStringDataWriter
MostFrequentValueClassifierBuilder<OUTCOME_TYPE> - Class in org.cleartk.ml.baseline: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
MostFrequentValueClassifierBuilder() - Constructor for class org.cleartk.ml.baseline.MostFrequentValueClassifierBuilder
movePastWhiteSpaceChars(String, int) - Static method in class org.cleartk.util.treebank.TreebankFormatParser
MpAnalyzer - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
MpAnalyzer() - Constructor for class org.cleartk.clearnlp.MpAnalyzer
MpAnalyzer_ImplBase<TOKEN_TYPE extends Annotation> - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
MpAnalyzer_ImplBase(TokenOps<TOKEN_TYPE>) - Constructor for class org.cleartk.clearnlp.MpAnalyzer_ImplBase
MU_DEFAULT - Static variable in class org.cleartk.ml.tksvmlight.model.TreeKernel
MultiBagEncoder - Class in org.cleartk.ml.encoder.features: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
MultiBagEncoder(String, NameNumberNormalizer) - Constructor for class org.cleartk.ml.encoder.features.MultiBagEncoder
MultiBagEncoder(String) - Constructor for class org.cleartk.ml.encoder.features.MultiBagEncoder
MultiBagEncoder(NameNumberNormalizer) - Constructor for class org.cleartk.ml.encoder.features.MultiBagEncoder
MultiBagEncoder() - Constructor for class org.cleartk.ml.encoder.features.MultiBagEncoder
multipleExceptions(List<? extends Throwable>) - Static method in exception org.cleartk.ml.CleartkProcessingException
multipleNewlinesRegex - Static variable in class org.cleartk.opennlp.tools.SentenceAnnotator
multipleWhitespacePattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
multipleWhitespacePattern - Static variable in class org.cleartk.token.tokenizer.Subtokenizer
multipleWhitespaceRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
multipleWhitespaceRegex - Static variable in class org.cleartk.token.tokenizer.Subtokenizer
multiply(double) - Method in class org.cleartk.ml.util.featurevector.FeatureVector
mutualInformation(String, OUTCOME_T) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats
MutualInformationFeatureSelectionExtractor<OUTCOME_T,FOCUS_T extends Annotation> - Class in org.cleartk.ml.feature.selection: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
MutualInformationFeatureSelectionExtractor(String, FeatureExtractor1<FOCUS_T>) - Constructor for class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor
MutualInformationFeatureSelectionExtractor(String, FeatureExtractor1<FOCUS_T>, int) - Constructor for class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor
MutualInformationFeatureSelectionExtractor(String, FeatureExtractor1<FOCUS_T>, MutualInformationFeatureSelectionExtractor.CombineScoreMethod, double, int) - Constructor for class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor
MutualInformationFeatureSelectionExtractor.CombineScoreMethod - Enum in org.cleartk.ml.feature.selection: Specifies how scores for each outcome should be combined/aggregated into a single score
MutualInformationFeatureSelectionExtractor.CombineScoreMethod.AverageScores<OUTCOME_T> - Class in org.cleartk.ml.feature.selection
MutualInformationFeatureSelectionExtractor.CombineScoreMethod.AverageScores() - Constructor for class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod.AverageScores
MutualInformationFeatureSelectionExtractor.CombineScoreMethod.CombineScoreFunction<OUTCOME_T> - Class in org.cleartk.ml.feature.selection
MutualInformationFeatureSelectionExtractor.CombineScoreMethod.CombineScoreFunction() - Constructor for class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod.CombineScoreFunction
MutualInformationFeatureSelectionExtractor.CombineScoreMethod.MaxScores<OUTCOME_T> - Class in org.cleartk.ml.feature.selection
MutualInformationFeatureSelectionExtractor.CombineScoreMethod.MaxScores() - Constructor for class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod.MaxScores
MutualInformationFeatureSelectionExtractor.MutualInformationStats<OUTCOME_T> - Class in org.cleartk.ml.feature.selection: Helper class for aggregating and computing mutual information statistics
MutualInformationFeatureSelectionExtractor.MutualInformationStats(double) - Constructor for class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats
MutualInformationFeatureSelectionExtractor.MutualInformationStats.ComputeFeatureScore<OUTCOME_T> - Class in org.cleartk.ml.feature.selection
MutualInformationFeatureSelectionExtractor.MutualInformationStats.ComputeFeatureScore(MutualInformationFeatureSelectionExtractor.MutualInformationStats<OUTCOME_T>, MutualInformationFeatureSelectionExtractor.CombineScoreMethod) - Constructor for class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats.ComputeFeatureScore

N

NaiveBayesTrainerFactory - Class in org.cleartk.ml.mallet.factory: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
NaiveBayesTrainerFactory() - Constructor for class org.cleartk.ml.mallet.factory.NaiveBayesTrainerFactory
name - Variable in class org.cleartk.feature.syntax.SyntacticPathExtractor
name - Variable in class org.cleartk.ml.encoder.features.NameNumber
name - Variable in class org.cleartk.ml.Feature
name - Variable in class org.cleartk.ml.feature.transform.OneToOneTrainableExtractor_ImplBase
name - Variable in class org.cleartk.ml.feature.transform.TrainableExtractor_ImplBase
NAME - Static variable in class org.cleartk.ml.mallet.factory.C45TrainerFactory
NAME - Static variable in class org.cleartk.ml.mallet.factory.MaxEntTrainerFactory
NAME - Static variable in class org.cleartk.ml.mallet.factory.McMaxEntTrainerFactory
NAME - Static variable in class org.cleartk.ml.mallet.factory.NaiveBayesTrainerFactory
NamedEntityChunker - Class in org.cleartk.examples.chunking: This is the most important class in the named entity chunking example -- it demonstrates how to write a ClearTK annotator that creates NamedEntityMention annotations by classifying Token annotations.
NamedEntityChunker() - Constructor for class org.cleartk.examples.chunking.NamedEntityChunker
NamedFeatureExtractor1<T extends Annotation> - Interface in org.cleartk.ml.feature.extractor: A FeatureExtractor1 that provides the name used for the features it creates.
nameFeature(Feature) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor
NameNumber - Class in org.cleartk.ml.encoder.features: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
NameNumber(String, Number) - Constructor for class org.cleartk.ml.encoder.features.NameNumber
NameNumberFeaturesEncoder - Class in org.cleartk.ml.encoder.features: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
NameNumberFeaturesEncoder(boolean, boolean) - Constructor for class org.cleartk.ml.encoder.features.NameNumberFeaturesEncoder
NameNumberFeaturesEncoder() - Constructor for class org.cleartk.ml.encoder.features.NameNumberFeaturesEncoder
NameNumberNormalizer - Interface in org.cleartk.ml.encoder.features.normalizer: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
NAMES - Static variable in interface org.cleartk.ml.mallet.factory.ClassifierTrainerFactory
NamingExtractor1<T extends Annotation> - Class in org.cleartk.ml.feature.extractor: Copyright (c) 2007-2009, Regents of the University of Colorado
All rights reserved.
NamingExtractor1(String, FeatureExtractor1<T>) - Constructor for class org.cleartk.ml.feature.extractor.NamingExtractor1: Prepends the name of the features produced by subExtractor with the passed in name.
neitherParameterSet(String, Object, String, Object) - Static method in exception org.cleartk.util.CleartkInitializationException
newClassifier() - Method in class org.cleartk.ml.baseline.SingleOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.jar.JarClassifierBuilder: Create a new classifier using the attributes loaded by JarClassifierBuilder.unpackageClassifier(JarInputStream).
newClassifier() - Method in class org.cleartk.ml.liblinear.LibLinearBooleanOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.liblinear.LibLinearStringOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.libsvm.LibSvmBooleanOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.libsvm.LibSvmStringOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.libsvm.tk.TkLibSvmBooleanOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.mallet.grmm.GrmmClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.mallet.MalletBooleanOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.mallet.MalletCrfStringOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.mallet.MalletStringOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.opennlp.maxent.MaxentBooleanOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.opennlp.maxent.MaxentStringOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.svmlight.rank.SvmLightRankBuilder
newClassifier() - Method in class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.svmlight.SvmLightRegressionBuilder
newClassifier() - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.tksvmlight.TkSvmLightBooleanOutcomeClassifierBuilder: Create a TKSVMlightClassifier.
newClassifier() - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifierBuilder: Create the Classifier.
newClassifier() - Method in class org.cleartk.ml.viterbi.ViterbiClassifierBuilder
newClassifier() - Method in class org.cleartk.ml.weka.WekaStringOutcomeClassifierBuilder
newClassifier() - Method in class org.cleartk.summarization.classifier.SumBasicClassifierBuilder
newClassifierBuilder() - Method in class org.cleartk.ml.baseline.MeanValueDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.baseline.MostFrequentBooleanDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.baseline.MostFrequentStringDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.jar.DirectoryDataWriter: Constructs a new JarClassifierBuilder that will be set as the DirectoryDataWriter.classifierBuilder during object construction.
newClassifierBuilder() - Method in class org.cleartk.ml.liblinear.LibLinearBooleanOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.liblinear.LibLinearStringOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.libsvm.LibSvmBooleanOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.libsvm.LibSvmStringOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.libsvm.tk.TkLibSvmBooleanOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.libsvm.tk.TkLibSvmStringOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.mallet.grmm.GrmmDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.mallet.MalletBooleanOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.mallet.MalletCrfStringOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.mallet.MalletStringOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.opennlp.maxent.MaxentBooleanOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.opennlp.maxent.MaxentStringOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.svmlight.rank.SvmLightRankDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.svmlight.SvmLightRegressionDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.tksvmlight.TkSvmLightBooleanOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.tksvmlight.TkSvmLightStringOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.viterbi.ViterbiDataWriter
newClassifierBuilder() - Method in class org.cleartk.ml.weka.WekaStringOutcomeDataWriter
newClassifierBuilder() - Method in class org.cleartk.summarization.classifier.SumBasicDataWriter
newNode(JCas, int, int, String) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Create a leaf TreebankNode in a JCas.
newNode(JCas, String, TreebankNode...) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Create a branch TreebankNode in a JCas.
next() - Method in class org.cleartk.corpus.genia.pos.util.GeniaPosParser
next() - Method in class org.cleartk.ml.feature.transform.InstanceStream.Iterator
next() - Method in class org.cleartk.ml.mallet.InstanceListCreator.DataIterator
noAnnotationInWindow(Class<? extends Annotation>, Annotation) - Static method in exception org.cleartk.ml.feature.extractor.CleartkExtractorException
noAnnotationMatchingWindow(Class<? extends Annotation>, Annotation) - Static method in exception org.cleartk.ml.feature.extractor.CleartkExtractorException
noInstanceOutcome(List<?>) - Static method in exception org.cleartk.ml.CleartkProcessingException
noLeavesPath(TreebankNodeUtil.TreebankNodePath) - Static method in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase
noMatchingEncoder(Feature, List<? extends FeatureEncoder<?>>) - Static method in exception org.cleartk.ml.encoder.CleartkEncoderException
nonFinalPunctPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
nonFinalPunctRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
nonPeriodPunctPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
nonPeriodPunctRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
NoOpNormalizer - Class in org.cleartk.ml.encoder.features.normalizer: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
NoOpNormalizer() - Constructor for class org.cleartk.ml.encoder.features.normalizer.NoOpNormalizer
normalize(List<NameNumber>) - Method in class org.cleartk.ml.encoder.features.normalizer.EuclidianNormalizer
normalize(List<NameNumber>) - Method in interface org.cleartk.ml.encoder.features.normalizer.NameNumberNormalizer
normalize(List<NameNumber>) - Method in class org.cleartk.ml.encoder.features.normalizer.NoOpNormalizer
notExactlyOneParameterSet(String, Object, String, Object) - Static method in exception org.cleartk.util.CleartkInitializationException
notPrimitive(Feature) - Static method in exception org.cleartk.ml.feature.extractor.CleartkExtractorException
notPrimitiveArray(Feature) - Static method in exception org.cleartk.ml.feature.extractor.CleartkExtractorException
notSingleCharacter(String, Object) - Static method in exception org.cleartk.util.CleartkInitializationException
number - Variable in class org.cleartk.ml.encoder.features.NameNumber
NumberEncoder - Class in org.cleartk.ml.encoder.features: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
NumberEncoder() - Constructor for class org.cleartk.ml.encoder.features.NumberEncoder
numberOfFiles - Variable in class org.cleartk.corpus.penntreebank.PennTreebankReader
NumericTypeFeatureFunction - Class in org.cleartk.ml.feature.function: Copyright (c) 2007-2012, Regents of the University of Colorado
All rights reserved.
NumericTypeFeatureFunction() - Constructor for class org.cleartk.ml.feature.function.NumericTypeFeatureFunction
NumericTypeFeatureFunction.NumericType - Enum in org.cleartk.ml.feature.function
NumericTypeUtil - Class in org.cleartk.ml.feature.util: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
NumericTypeUtil() - Constructor for class org.cleartk.ml.feature.util.NumericTypeUtil
numUrisCompleted - Variable in class org.cleartk.util.cr.UriCollectionReader

O

OneToOneTrainableExtractor_ImplBase<OUTCOME_T> - Class in org.cleartk.ml.feature.transform: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
OneToOneTrainableExtractor_ImplBase(String) - Constructor for class org.cleartk.ml.feature.transform.OneToOneTrainableExtractor_ImplBase
oneWordAbbreviationPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
oneWordAbbreviationRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
openBracesRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
org.cleartk.berkeleyparser - package org.cleartk.berkeleyparser
org.cleartk.clearnlp - package org.cleartk.clearnlp
org.cleartk.corpus.ace2005 - package org.cleartk.corpus.ace2005
org.cleartk.corpus.conll2003 - package org.cleartk.corpus.conll2003
org.cleartk.corpus.conll2005 - package org.cleartk.corpus.conll2005
org.cleartk.corpus.genia.pos - package org.cleartk.corpus.genia.pos
org.cleartk.corpus.genia.pos.util - package org.cleartk.corpus.genia.pos.util
org.cleartk.corpus.penntreebank - package org.cleartk.corpus.penntreebank
org.cleartk.corpus.propbank - package org.cleartk.corpus.propbank
org.cleartk.corpus.propbank.util - package org.cleartk.corpus.propbank.util
org.cleartk.corpus.timeml - package org.cleartk.corpus.timeml
org.cleartk.eval - package org.cleartk.eval
org.cleartk.eval.util - package org.cleartk.eval.util
org.cleartk.examples.chunking - package org.cleartk.examples.chunking
org.cleartk.examples.chunking.util - package org.cleartk.examples.chunking.util
org.cleartk.examples.documentclassification.advanced - package org.cleartk.examples.documentclassification.advanced
org.cleartk.examples.documentclassification.basic - package org.cleartk.examples.documentclassification.basic
org.cleartk.examples.linewriter - package org.cleartk.examples.linewriter
org.cleartk.examples.parser - package org.cleartk.examples.parser
org.cleartk.examples.pos - package org.cleartk.examples.pos
org.cleartk.examples.treebank - package org.cleartk.examples.treebank
org.cleartk.feature - package org.cleartk.feature
org.cleartk.feature.syntax - package org.cleartk.feature.syntax
org.cleartk.feature.token - package org.cleartk.feature.token
org.cleartk.maltparser - package org.cleartk.maltparser
org.cleartk.ml - package org.cleartk.ml
org.cleartk.ml.baseline - package org.cleartk.ml.baseline
org.cleartk.ml.chunking - package org.cleartk.ml.chunking
org.cleartk.ml.crfsuite - package org.cleartk.ml.crfsuite
org.cleartk.ml.encoder - package org.cleartk.ml.encoder
org.cleartk.ml.encoder.features - package org.cleartk.ml.encoder.features
org.cleartk.ml.encoder.features.normalizer - package org.cleartk.ml.encoder.features.normalizer
org.cleartk.ml.encoder.outcome - package org.cleartk.ml.encoder.outcome
org.cleartk.ml.feature - package org.cleartk.ml.feature
org.cleartk.ml.feature.extractor - package org.cleartk.ml.feature.extractor
org.cleartk.ml.feature.function - package org.cleartk.ml.feature.function
org.cleartk.ml.feature.selection - package org.cleartk.ml.feature.selection
org.cleartk.ml.feature.transform - package org.cleartk.ml.feature.transform
org.cleartk.ml.feature.transform.extractor - package org.cleartk.ml.feature.transform.extractor
org.cleartk.ml.feature.util - package org.cleartk.ml.feature.util
org.cleartk.ml.jar - package org.cleartk.ml.jar
org.cleartk.ml.liblinear - package org.cleartk.ml.liblinear
org.cleartk.ml.liblinear.encoder - package org.cleartk.ml.liblinear.encoder
org.cleartk.ml.libsvm - package org.cleartk.ml.libsvm
org.cleartk.ml.libsvm.tk - package org.cleartk.ml.libsvm.tk
org.cleartk.ml.libsvm.util - package org.cleartk.ml.libsvm.util
org.cleartk.ml.mallet - package org.cleartk.ml.mallet
org.cleartk.ml.mallet.factory - package org.cleartk.ml.mallet.factory
org.cleartk.ml.mallet.grmm - package org.cleartk.ml.mallet.grmm
org.cleartk.ml.multi - package org.cleartk.ml.multi
org.cleartk.ml.opennlp.maxent - package org.cleartk.ml.opennlp.maxent
org.cleartk.ml.opennlp.maxent.encoder - package org.cleartk.ml.opennlp.maxent.encoder
org.cleartk.ml.sigmoid - package org.cleartk.ml.sigmoid
org.cleartk.ml.svmlight - package org.cleartk.ml.svmlight
org.cleartk.ml.svmlight.model - package org.cleartk.ml.svmlight.model
org.cleartk.ml.svmlight.rank - package org.cleartk.ml.svmlight.rank
org.cleartk.ml.tksvmlight - package org.cleartk.ml.tksvmlight
org.cleartk.ml.tksvmlight.model - package org.cleartk.ml.tksvmlight.model
org.cleartk.ml.util - package org.cleartk.ml.util
org.cleartk.ml.util.featurevector - package org.cleartk.ml.util.featurevector
org.cleartk.ml.viterbi - package org.cleartk.ml.viterbi
org.cleartk.ml.weka - package org.cleartk.ml.weka
org.cleartk.opennlp.tools - package org.cleartk.opennlp.tools
org.cleartk.opennlp.tools.parser - package org.cleartk.opennlp.tools.parser
org.cleartk.snowball - package org.cleartk.snowball
org.cleartk.stanford.corenlp - package org.cleartk.stanford.corenlp
org.cleartk.summarization - package org.cleartk.summarization
org.cleartk.summarization.classifier - package org.cleartk.summarization.classifier
org.cleartk.syntax.constituent.type - package org.cleartk.syntax.constituent.type
org.cleartk.test.util - package org.cleartk.test.util
org.cleartk.timeml - package org.cleartk.timeml
org.cleartk.timeml.eval - package org.cleartk.timeml.eval
org.cleartk.timeml.event - package org.cleartk.timeml.event
org.cleartk.timeml.time - package org.cleartk.timeml.time
org.cleartk.timeml.tlink - package org.cleartk.timeml.tlink
org.cleartk.timeml.util - package org.cleartk.timeml.util
org.cleartk.token - package org.cleartk.token
org.cleartk.token.breakit - package org.cleartk.token.breakit
org.cleartk.token.pos - package org.cleartk.token.pos
org.cleartk.token.pos.impl - package org.cleartk.token.pos.impl
org.cleartk.token.tokenizer - package org.cleartk.token.tokenizer
org.cleartk.util - package org.cleartk.util
org.cleartk.util.ae - package org.cleartk.util.ae
org.cleartk.util.ae.linewriter - package org.cleartk.util.ae.linewriter
org.cleartk.util.ae.linewriter.annotation - package org.cleartk.util.ae.linewriter.annotation
org.cleartk.util.ae.linewriter.block - package org.cleartk.util.ae.linewriter.block
org.cleartk.util.ae.parenthetical - package org.cleartk.util.ae.parenthetical
org.cleartk.util.collection - package org.cleartk.util.collection
org.cleartk.util.cr - package org.cleartk.util.cr
org.cleartk.util.cr.linereader - package org.cleartk.util.cr.linereader
org.cleartk.util.similarity - package org.cleartk.util.similarity
org.cleartk.util.treebank - package org.cleartk.util.treebank
ORIENTATION_LEFT - Static variable in class org.cleartk.ml.feature.extractor.WhiteSpaceExtractor
ORIENTATION_RIGHT - Static variable in class org.cleartk.ml.feature.extractor.WhiteSpaceExtractor
OS_LINUX - Static variable in class org.cleartk.util.PlatformDetection
OS_OSX - Static variable in class org.cleartk.util.PlatformDetection
OS_SOLARIS - Static variable in class org.cleartk.util.PlatformDetection
OS_WINDOWS - Static variable in class org.cleartk.util.PlatformDetection
OutcomeEncoder<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Interface in org.cleartk.ml.encoder.outcome: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
outcomeEncoder - Variable in class org.cleartk.ml.jar.EncodingDirectoryDataWriterFactory
outcomeEncoder - Variable in class org.cleartk.ml.jar.EncodingJarClassifier
outcomeEncoder - Variable in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
outcomeExample - Variable in class org.cleartk.ml.mallet.grmm.GrmmClassifier
outcomeExample - Variable in class org.cleartk.ml.mallet.grmm.GrmmClassifierBuilder
OutcomeFeatureExtractor - Interface in org.cleartk.ml.viterbi: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
outcomeFeatureExtractorNames - Variable in class org.cleartk.ml.viterbi.ViterbiDataWriterFactory
outcomeFeatureExtractors - Variable in class org.cleartk.ml.viterbi.ViterbiClassifier
outcomeFeatureExtractors - Variable in class org.cleartk.ml.viterbi.ViterbiDataWriter
OutcomeOnlyDataWriter<CLASSIFIER_BUILDER extends SingleOutcomeClassifierBuilder<OUTCOME_TYPE>,OUTCOME_TYPE> - Class in org.cleartk.ml.baseline: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
OutcomeOnlyDataWriter(File) - Constructor for class org.cleartk.ml.baseline.OutcomeOnlyDataWriter
outcomeToString(Double) - Method in class org.cleartk.ml.svmlight.rank.SvmLightRankDataWriter
outcomeToString(Boolean) - Method in class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeDataWriter
outcomeToString(ENCODED_OUTCOME_TYPE) - Method in class org.cleartk.ml.svmlight.SvmLightDataWriter_ImplBase
outcomeToString(Double) - Method in class org.cleartk.ml.svmlight.SvmLightRegressionDataWriter
outputDir - Variable in class org.cleartk.examples.pos.ExamplePosPlainTextWriter
outputDirectory - Variable in class org.cleartk.ml.jar.DirectoryDataWriter
outputDirectory - Variable in class org.cleartk.ml.jar.DirectoryDataWriterFactory
outputDirectory - Variable in class org.cleartk.ml.viterbi.ViterbiDataWriter
outputDirectory - Variable in class org.cleartk.test.util.CleartkTestBase
outputDirectory - Variable in class org.cleartk.util.ae.XmiWriter
outputDirectoryName - Variable in class org.cleartk.test.util.CleartkTestBase
outputDirectoryRoot - Variable in class org.cleartk.ml.multi.CleartkMultiAnnotator
OutputTypesHelper<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation,PARSE_TYPE,TOP_NODE_TYPE extends Annotation> - Interface in org.cleartk.berkeleyparser: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
outputTypesHelper - Variable in class org.cleartk.berkeleyparser.ParserWrapper_ImplBase
OutputTypesHelper<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation,PARSE_TYPE,TOP_NODE_TYPE extends Annotation> - Interface in org.cleartk.opennlp.tools.parser: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
outputTypesHelper - Variable in class org.cleartk.opennlp.tools.parser.ParserWrapper_ImplBase
outputTypesHelperClassName - Variable in class org.cleartk.berkeleyparser.ParserWrapper_ImplBase
outputTypesHelperClassName - Variable in class org.cleartk.opennlp.tools.parser.ParserWrapper_ImplBase
outputUri - Variable in class org.cleartk.summarization.SummarySentenceWriterAnnotator
overlaps(Annotation, Annotation) - Static method in class org.cleartk.util.AnnotationUtil
OVERLAPS_LEFT - Static variable in class org.cleartk.ml.feature.extractor.RelativePositionExtractor
OVERLAPS_RIGHT - Static variable in class org.cleartk.ml.feature.extractor.RelativePositionExtractor

P

packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.baseline.SingleOutcomeClassifierBuilder
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeClassifierBuilder
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
packageClassifier(File) - Method in class org.cleartk.ml.jar.JarClassifierBuilder: Create a classifier jar file from a directory where a classifier model was trained by JarClassifierBuilder.trainClassifier(File, String[]).
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.jar.JarClassifierBuilder: Add elements to a classifier jar.
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.liblinear.GenericLibLinearClassifierBuilder
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.libsvm.GenericLibSvmClassifierBuilder
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.libsvm.tk.TkLibSvmBooleanOutcomeClassifierBuilder: package the classifier found in dir into the a Jar file.
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.mallet.grmm.GrmmClassifierBuilder
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.mallet.MalletClassifierBuilder_ImplBase
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.mallet.MalletCrfStringOutcomeClassifierBuilder
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.opennlp.maxent.MaxentClassifierBuilder_ImplBase
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeClassifierBuilder
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.svmlight.SvmLightClassifierBuilder_ImplBase
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeClassifierBuilder
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.tksvmlight.TkSvmLightBooleanOutcomeClassifierBuilder: package the classifier found in dir into the a Jar file.
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifierBuilder: Package the classifier into a jar file.
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.ml.viterbi.ViterbiClassifierBuilder
packageClassifier(File, JarOutputStream) - Method in class org.cleartk.summarization.classifier.SummarizationClassifierBuilder
PARAM_ACE_DIRECTORY_NAME - Static variable in class org.cleartk.corpus.ace2005.Ace2005GoldReader
PARAM_ACE_FILE_NAMES_FILE - Static variable in class org.cleartk.corpus.ace2005.Ace2005GoldReader
PARAM_ADD_SCORES - Static variable in class org.cleartk.ml.viterbi.ViterbiClassifier
PARAM_ADVANCE_PERCENTAGE - Static variable in class org.cleartk.opennlp.tools.ParserAnnotator
PARAM_ANNOTATION_TYPE_NAME - Static variable in class org.cleartk.token.breakit.BreakIteratorAnnotator
PARAM_ANNOTATION_WRITER_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_ARTICLE_IDS_LIST_FILE - Static variable in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
PARAM_BEAM_SIZE - Static variable in class org.cleartk.opennlp.tools.ParserAnnotator
PARAM_BLOCK_ANNOTATION_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_BLOCK_WRITER_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_BREAK_ITERATOR_TYPE - Static variable in class org.cleartk.token.breakit.BreakIteratorAnnotator
PARAM_CLASSIFIER_FACTORY_CLASS_NAME - Static variable in class org.cleartk.ml.CleartkAnnotator
PARAM_CLASSIFIER_FACTORY_CLASS_NAME - Static variable in class org.cleartk.ml.CleartkSequenceAnnotator
PARAM_CLASSIFIER_FACTORY_CLASS_NAME - Static variable in class org.cleartk.ml.multi.CleartkMultiAnnotator
PARAM_CLASSIFIER_JAR_PATH - Static variable in class org.cleartk.ml.jar.GenericJarClassifierFactory
PARAM_COMMENT_SPECIFIERS - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_CONLL2005_DATA_FILE - Static variable in class org.cleartk.corpus.conll2005.Conll2005GoldReader
PARAM_CORPUS_DIRECTORY_NAME - Static variable in class org.cleartk.corpus.penntreebank.PennTreebankReader
PARAM_CREATE_EVENTS - Static variable in class org.cleartk.timeml.tlink.VerbClauseTemporalAnnotator
PARAM_DATA_DIRECTORIES - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
PARAM_DATA_FILE_NAME - Static variable in class org.cleartk.corpus.conll2003.Conll2003GoldReader
PARAM_DATA_WRITER_CLASS_NAME - Static variable in class org.cleartk.ml.jar.DefaultDataWriterFactory
PARAM_DATA_WRITER_CLASS_NAME - Static variable in class org.cleartk.ml.jar.DefaultSequenceDataWriterFactory
PARAM_DATA_WRITER_FACTORY_CLASS_NAME - Static variable in class org.cleartk.ml.CleartkAnnotator
PARAM_DATA_WRITER_FACTORY_CLASS_NAME - Static variable in class org.cleartk.ml.CleartkSequenceAnnotator
PARAM_DATA_WRITER_FACTORY_CLASS_NAME - Static variable in class org.cleartk.ml.multi.CleartkMultiAnnotator
PARAM_DELEGATED_DATA_WRITER_FACTORY_CLASS - Static variable in class org.cleartk.ml.viterbi.ViterbiDataWriterFactory
PARAM_DELIMITER - Static variable in class org.cleartk.util.cr.linereader.SimpleLineHandler
PARAM_DICTIONARY_URI - Static variable in class org.cleartk.clearnlp.Tokenizer_ImplBase
PARAM_DIRECTORY - Static variable in class org.cleartk.util.cr.UriCollectionReader
PARAM_DIRECTORY_FILTER_CLASS - Static variable in class org.cleartk.util.cr.UriCollectionReader
PARAM_DOCUMENT_CREATION_TIME_VIEW - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_DOCUMENT_CREATION_TIME_VIEWS - Static variable in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
PARAM_ENCODING - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_ENCODING - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_EVENT_ATTRIBUTE_VIEW - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_EVENT_ATTRIBUTE_VIEWS - Static variable in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
PARAM_EVENT_EXTENT_VIEW - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_EVENT_EXTENT_VIEWS - Static variable in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
PARAM_FEATURE_EXTRACTOR_CLASS_NAME - Static variable in class org.cleartk.token.pos.PosAnnotator
PARAM_FILE_FILTER_CLASS - Static variable in class org.cleartk.util.cr.UriCollectionReader
PARAM_FILE_NAMES - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_FILE_OR_DIRECTORY_NAME - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_FILE_SUFFIX - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_FILES - Static variable in class org.cleartk.util.cr.UriCollectionReader
PARAM_GENIA_CORPUS_FILE - Static variable in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
PARAM_HAS_VERB_SENSES - Static variable in class org.cleartk.corpus.conll2005.Conll2005GoldAnnotator
PARAM_IGNORE_SYSTEM_FILES - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_INFERRED_TLINKS_DIRECTORIES - Static variable in class org.cleartk.timeml.eval.TempEval2013Evaluation.UseInferredTlinks
PARAM_INPUT_TYPES_HELPER_CLASS_NAME - Static variable in class org.cleartk.berkeleyparser.ParserWrapper_ImplBase
PARAM_INPUT_TYPES_HELPER_CLASS_NAME - Static variable in class org.cleartk.opennlp.tools.parser.ParserWrapper_ImplBase
PARAM_IS_TRAINING - Static variable in class org.cleartk.ml.CleartkAnnotator
PARAM_IS_TRAINING - Static variable in class org.cleartk.ml.CleartkSequenceAnnotator
PARAM_IS_TRAINING - Static variable in class org.cleartk.ml.multi.CleartkMultiAnnotator
PARAM_LANGUAGE - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_LANGUAGE - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_LANGUAGE_CODE - Static variable in class org.cleartk.clearnlp.DependencyParser_ImplBase
PARAM_LANGUAGE_CODE - Static variable in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
PARAM_LANGUAGE_CODE - Static variable in class org.cleartk.clearnlp.PosTagger_ImplBase
PARAM_LANGUAGE_CODE - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
PARAM_LANGUAGE_CODE - Static variable in class org.cleartk.clearnlp.Tokenizer_ImplBase
PARAM_LEAST_RECENT_OUTCOME - Static variable in class org.cleartk.ml.viterbi.DefaultOutcomeFeatureExtractor
PARAM_LEFT_PARENTHESIS - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
PARAM_LINE_HANDLER_CLASS_NAME - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_LOAD_ENCODERS_FROM_FILE_SYSTEM - Static variable in class org.cleartk.ml.jar.EncodingDirectoryDataWriterFactory
PARAM_LOAD_NAMED_ENTITIES - Static variable in class org.cleartk.corpus.conll2003.Conll2003GoldReader
PARAM_LOAD_POS_TAGS - Static variable in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
PARAM_LOAD_SENTENCES - Static variable in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
PARAM_LOAD_TLINKS - Static variable in class org.cleartk.corpus.timeml.TimeMlGoldAnnotator
PARAM_LOAD_TOKENS - Static variable in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader
PARAM_LOCALE - Static variable in class org.cleartk.token.breakit.BreakIteratorAnnotator
PARAM_MINMAX_URI - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
PARAM_MODEL_FILE_NAME - Static variable in class org.cleartk.maltparser.MaltParser
PARAM_MODEL_PATH - Static variable in class org.cleartk.clearnlp.PosTagger_ImplBase
PARAM_MOST_RECENT_OUTCOME - Static variable in class org.cleartk.ml.viterbi.DefaultOutcomeFeatureExtractor
PARAM_NAME_FILES_FILE_NAMES - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_OUTCOME_FEATURE_EXTRACTOR_NAMES - Static variable in class org.cleartk.ml.viterbi.ViterbiDataWriterFactory
PARAM_OUTPUT_ANNOTATION_CLASS_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_OUTPUT_DIRECTORY - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_OUTPUT_DIRECTORY - Static variable in class org.cleartk.corpus.timeml.TempEval2013Writer
PARAM_OUTPUT_DIRECTORY - Static variable in class org.cleartk.ml.jar.DirectoryDataWriterFactory
PARAM_OUTPUT_DIRECTORY - Static variable in class org.cleartk.util.ae.XmiWriter
PARAM_OUTPUT_DIRECTORY_NAME - Static variable in class org.cleartk.corpus.ace2005.Ace2005Writer
PARAM_OUTPUT_DIRECTORY_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2007Writer
PARAM_OUTPUT_DIRECTORY_NAME - Static variable in class org.cleartk.examples.pos.ExamplePosPlainTextWriter
PARAM_OUTPUT_DIRECTORY_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_OUTPUT_DIRECTORY_NAME - Static variable in class org.cleartk.util.ae.PlainTextWriter
PARAM_OUTPUT_FILE - Static variable in class org.cleartk.corpus.conll2005.Conll2005Writer
PARAM_OUTPUT_FILE_NAME - Static variable in class org.cleartk.util.ae.linewriter.LineWriter
PARAM_OUTPUT_TYPES_HELPER_CLASS_NAME - Static variable in class org.cleartk.berkeleyparser.ParserWrapper_ImplBase
PARAM_OUTPUT_TYPES_HELPER_CLASS_NAME - Static variable in class org.cleartk.opennlp.tools.parser.ParserWrapper_ImplBase
PARAM_OUTPUT_URI - Static variable in class org.cleartk.summarization.SummarySentenceWriterAnnotator
PARAM_PARENTHETICAL_TYPE_NAME - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
PARAM_PARSER_MODEL_PATH - Static variable in class org.cleartk.berkeleyparser.ParserAnnotator
PARAM_PARSER_MODEL_PATH - Static variable in class org.cleartk.clearnlp.DependencyParser_ImplBase
PARAM_PARSER_MODEL_PATH - Static variable in class org.cleartk.opennlp.tools.ParserAnnotator
PARAM_PATTERNS - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_PENNTREEBANK_DIRECTORY_NAME - Static variable in class org.cleartk.corpus.propbank.PropbankGoldReader
PARAM_POST_TREES - Static variable in class org.cleartk.corpus.penntreebank.TreebankGoldAnnotator
PARAM_POSTAG_MODEL_FILE - Static variable in class org.cleartk.opennlp.tools.PosTaggerAnnotator
PARAM_PRED_ID_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
PARAM_PROPBANK_FILE_NAME - Static variable in class org.cleartk.corpus.propbank.PropbankGoldReader
PARAM_RIGHT_PARENTHESIS - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
PARAM_ROLESET_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
PARAM_ROOT_FILE - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_SECTIONS_SPECIFIER - Static variable in class org.cleartk.corpus.penntreebank.PennTreebankReader
PARAM_SELECTED_FILE_NAMES - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
PARAM_SENTENCE_MODEL_PATH - Static variable in class org.cleartk.opennlp.tools.SentenceAnnotator
PARAM_SENTENCE_TYPE_NAME - Static variable in class org.cleartk.opennlp.tools.SentenceAnnotator
PARAM_SKIP_BLANK_LINES - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_SOURCE_VIEW - Static variable in class org.cleartk.timeml.eval.TempEval2013Evaluation.CopyEventsAndTimes
PARAM_SOURCE_VIEW - Static variable in class org.cleartk.timeml.eval.TempEval2013Evaluation.CopyTextAndDocumentCreationTime
PARAM_SRL_MODEL_PATH - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
PARAM_STACK_SIZE - Static variable in class org.cleartk.ml.viterbi.ViterbiClassifier
PARAM_STEMMER_NAME - Static variable in class org.cleartk.snowball.SnowballStemmer
PARAM_STOPWORDS_URI - Static variable in class org.cleartk.summarization.SumBasicAnnotator
PARAM_SUFFIXES - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_SUFFIXES - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_TEMPORAL_LINK_EVENT_TO_DOCUMENT_CREATION_TIME_VIEW - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_TEMPORAL_LINK_EVENT_TO_DOCUMENT_CREATION_TIME_VIEWS - Static variable in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
PARAM_TEMPORAL_LINK_EVENT_TO_SAME_SENTENCE_TIME_VIEW - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_TEMPORAL_LINK_EVENT_TO_SAME_SENTENCE_TIME_VIEWS - Static variable in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
PARAM_TEMPORAL_LINK_EVENT_TO_SUBORDINATED_EVENT_VIEW - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_TEMPORAL_LINK_EVENT_TO_SUBORDINATED_EVENT_VIEWS - Static variable in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
PARAM_TEMPORAL_LINK_MAIN_EVENT_TO_NEXT_SENTENCE_MAIN_EVENT_VIEW - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_TEMPORAL_LINK_MAIN_EVENT_TO_NEXT_SENTENCE_MAIN_EVENT_VIEWS - Static variable in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
PARAM_TEXT_VIEW - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_TEXT_VIEWS - Static variable in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
PARAM_TF_IDF_CENTROID_SIMILARITY_URI - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
PARAM_TF_IDF_URI - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
PARAM_TIME_ATTRIBUTE_VIEW - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_TIME_ATTRIBUTE_VIEWS - Static variable in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
PARAM_TIME_EXTENT_VIEW - Static variable in class org.cleartk.corpus.timeml.TempEval2010Writer
PARAM_TIME_EXTENT_VIEWS - Static variable in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
PARAM_TLINK_FILE_URL - Static variable in class org.cleartk.corpus.timeml.PlainTextTlinkGoldAnnotator
PARAM_TOKEN_FIELD - Static variable in class org.cleartk.summarization.SumBasicAnnotator
PARAM_TOKEN_TYPE_NAME - Static variable in class org.cleartk.token.tokenizer.TokenAnnotator
PARAM_TOKENIZER_NAME - Static variable in class org.cleartk.token.tokenizer.TokenAnnotator
PARAM_TREEBANK_DIRECTORY_NAME - Static variable in class org.cleartk.corpus.timeml.TreebankAligningAnnotator
PARAM_URIS - Static variable in class org.cleartk.util.cr.UriCollectionReader
PARAM_USE4GRAM - Static variable in class org.cleartk.ml.viterbi.DefaultOutcomeFeatureExtractor
PARAM_USE_BIGRAM - Static variable in class org.cleartk.ml.viterbi.DefaultOutcomeFeatureExtractor
PARAM_USE_TAGS_FROM_CAS - Static variable in class org.cleartk.opennlp.tools.ParserAnnotator
PARAM_USE_TRIGRAM - Static variable in class org.cleartk.ml.viterbi.DefaultOutcomeFeatureExtractor
PARAM_VIEW_NAME - Static variable in class org.cleartk.util.cr.FilesCollectionReader
PARAM_VIEW_NAME - Static variable in class org.cleartk.util.cr.linereader.LineReader
PARAM_WINDOW_CLASS - Static variable in class org.cleartk.clearnlp.DependencyParser_ImplBase
PARAM_WINDOW_CLASS - Static variable in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
PARAM_WINDOW_CLASS - Static variable in class org.cleartk.clearnlp.PosTagger_ImplBase
PARAM_WINDOW_CLASS - Static variable in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
PARAM_WINDOW_CLASS - Static variable in class org.cleartk.clearnlp.Tokenizer_ImplBase
PARAM_WINDOW_CLASS_NAMES - Static variable in class org.cleartk.opennlp.tools.SentenceAnnotator
PARAM_WINDOW_TYPE_NAME - Static variable in class org.cleartk.token.tokenizer.TokenAnnotator
PARAM_WINDOW_TYPE_NAME - Static variable in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
PARAM_WRITE_SCORES - Static variable in class org.cleartk.summarization.SummarySentenceWriterAnnotator
PARAM_WSJ_SECTIONS - Static variable in class org.cleartk.corpus.propbank.PropbankGoldReader
PARAM_XMI_DIRECTORY - Static variable in class org.cleartk.summarization.SumBasic.XMIReader
PARAM_XMI_DIRECTORY - Static variable in class org.cleartk.timeml.eval.TempEval2010Evaluation.XMIReader
PARAM_XML_SCHEME - Static variable in class org.cleartk.util.ae.UriToXmiCasAnnotator
PARAM_XML_SCHEME - Static variable in class org.cleartk.util.cr.XReader
PARAM_ZMUS_URI - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
parameterLessThan(String, Object, Object) - Static method in exception org.cleartk.util.CleartkInitializationException
ParametersTestUtil - Class in org.cleartk.test.util: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
ParametersTestUtil() - Constructor for class org.cleartk.test.util.ParametersTestUtil
ParamUtil - Class in org.cleartk.util: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
ParamUtil() - Constructor for class org.cleartk.util.ParamUtil
parensMatch(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser
ParentExtractor - Class in org.cleartk.feature.syntax: Copyright (c) 2007-2009, Regents of the University of Colorado
All rights reserved.
ParentExtractor(FeatureExtractor1<TreebankNode>) - Constructor for class org.cleartk.feature.syntax.ParentExtractor
ParentheticalAnnotator - Class in org.cleartk.util.ae.parenthetical: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
ParentheticalAnnotator() - Constructor for class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
parse(Element) - Method in class org.cleartk.corpus.genia.pos.util.GeniaPosParser
parse(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: Create TreebankNode objects corresponding to the given TreeBank format parse, e.g.:
parse(String, String, int) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: Create TreebankNode objects corresponding to the given TreeBank format parse, e.g.:
parseDocument(String, int, String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: This method parses an entire documents worth of treebanked sentences.
parseOutcome(String) - Method in class org.cleartk.ml.baseline.MeanValueClassifierBuilder
parseOutcome(String) - Method in class org.cleartk.ml.baseline.MostFrequentBooleanClassifierBuilder
parseOutcome(String) - Method in class org.cleartk.ml.baseline.MostFrequentStringClassifierBuilder
parseOutcome(String) - Method in class org.cleartk.ml.baseline.SingleOutcomeClassifierBuilder
parser - Variable in class org.cleartk.berkeleyparser.ParserAnnotator
Parser - Class in org.cleartk.opennlp.tools.parser: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
Parser(ParserModel, int, double) - Constructor for class org.cleartk.opennlp.tools.parser.Parser
Parser(ParserModel, int, double, POSTagger) - Constructor for class org.cleartk.opennlp.tools.parser.Parser
parser - Variable in class org.cleartk.opennlp.tools.ParserAnnotator
ParserAnnotator<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation,TOP_NODE_TYPE extends Annotation> - Class in org.cleartk.berkeleyparser: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
ParserAnnotator() - Constructor for class org.cleartk.berkeleyparser.ParserAnnotator
ParserAnnotator<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation,TOP_NODE_TYPE extends Annotation> - Class in org.cleartk.opennlp.tools: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
ParserAnnotator() - Constructor for class org.cleartk.opennlp.tools.ParserAnnotator
ParserExample - Class in org.cleartk.examples.parser: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
ParserExample() - Constructor for class org.cleartk.examples.parser.ParserExample
ParserWrapper_ImplBase<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation,PARSE_TYPE,TOP_NODE_TYPE extends Annotation> - Class in org.cleartk.berkeleyparser: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
ParserWrapper_ImplBase() - Constructor for class org.cleartk.berkeleyparser.ParserWrapper_ImplBase
ParserWrapper_ImplBase<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation,PARSE_TYPE,TOP_NODE_TYPE extends Annotation> - Class in org.cleartk.opennlp.tools.parser: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
ParserWrapper_ImplBase() - Constructor for class org.cleartk.opennlp.tools.parser.ParserWrapper_ImplBase
pathMemberExtractor - Variable in class org.cleartk.feature.syntax.SyntacticPathExtractor
patterns - Variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
PennTreebankReader - Class in org.cleartk.corpus.penntreebank: PennTreebankReader reads in the PennTreebank (PTB) data distributed by the LDC.
PennTreebankReader() - Constructor for class org.cleartk.corpus.penntreebank.PennTreebankReader
PennTreebankTokenizer - Class in org.cleartk.token.tokenizer: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PennTreebankTokenizer() - Constructor for class org.cleartk.token.tokenizer.PennTreebankTokenizer
periodPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
periodRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
PlainTextTlinkGoldAnnotator - Class in org.cleartk.corpus.timeml: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PlainTextTlinkGoldAnnotator() - Constructor for class org.cleartk.corpus.timeml.PlainTextTlinkGoldAnnotator
PlainTextWriter - Class in org.cleartk.util.ae: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PlainTextWriter() - Constructor for class org.cleartk.util.ae.PlainTextWriter
PlatformDetection - Class in org.cleartk.util: Copyright (c) 2011-2012, Technische Universität Darmstadt
All rights reserved.
PlatformDetection() - Constructor for class org.cleartk.util.PlatformDetection
PolynomialKernel - Class in org.cleartk.ml.svmlight.model: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PolynomialKernel(double, double, int) - Constructor for class org.cleartk.ml.svmlight.model.PolynomialKernel
PosAnnotator<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation> - Class in org.cleartk.token.pos: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
PosAnnotator() - Constructor for class org.cleartk.token.pos.PosAnnotator
PosFeatureExtractor<TOKEN_TYPE extends Annotation,SENTENCE_TYPE extends Annotation> - Interface in org.cleartk.token.pos: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
PosTagger - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
PosTagger() - Constructor for class org.cleartk.clearnlp.PosTagger
PosTagger - Class in org.cleartk.opennlp.tools: An OpenNLP POSTagger that uses the ClearTK type system.
PosTagger() - Constructor for class org.cleartk.opennlp.tools.PosTagger
posTagger - Variable in class org.cleartk.opennlp.tools.PosTaggerAnnotator
PosTagger_ImplBase<TOKEN_TYPE extends Annotation> - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
PosTagger_ImplBase(TokenOps<TOKEN_TYPE>) - Constructor for class org.cleartk.clearnlp.PosTagger_ImplBase
PosTaggerAnnotator - Class in org.cleartk.opennlp.tools: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PosTaggerAnnotator() - Constructor for class org.cleartk.opennlp.tools.PosTaggerAnnotator
precision() - Method in class org.cleartk.eval.AnnotationStatistics
precision(OUTCOME_TYPE) - Method in class org.cleartk.eval.AnnotationStatistics
PREDICTION_VIEW_NAME - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
predictionToOutcome(double) - Method in class org.cleartk.ml.svmlight.rank.SvmLightRank
predictionToOutcome(double) - Method in class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeClassifier
predictionToOutcome(double) - Method in class org.cleartk.ml.svmlight.SvmLightClassifier_ImplBase
predictionToOutcome(double) - Method in class org.cleartk.ml.svmlight.SvmLightRegression
prepareString(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: This method was created simply as a way to clean up the parse string for a sentence in the treebank syntax.
preposition - Variable in class org.cleartk.corpus.propbank.util.Proplabel
print(PrintStream, TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: A "pretty print" of this node that may be useful for e.g.
process(JCas) - Method in class org.cleartk.berkeleyparser.ParserAnnotator
process(JCas) - Method in class org.cleartk.clearnlp.DependencyParser_ImplBase
process(JCas) - Method in class org.cleartk.clearnlp.MpAnalyzer_ImplBase
process(JCas) - Method in class org.cleartk.clearnlp.PosTagger_ImplBase
process(JCas) - Method in class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
process(JCas) - Method in class org.cleartk.clearnlp.Tokenizer_ImplBase
process(JCas) - Method in class org.cleartk.corpus.ace2005.Ace2005GoldAnnotator
process(JCas) - Method in class org.cleartk.corpus.ace2005.Ace2005Writer
process(JCas) - Method in class org.cleartk.corpus.conll2005.Conll2005GoldAnnotator
process(JCas) - Method in class org.cleartk.corpus.conll2005.Conll2005Writer
process(JCas) - Method in class org.cleartk.corpus.penntreebank.TreebankGoldAnnotator
process(JCas) - Method in class org.cleartk.corpus.propbank.PropbankGoldAnnotator
process(JCas) - Method in class org.cleartk.corpus.timeml.PlainTextTlinkGoldAnnotator
process(JCas) - Method in class org.cleartk.corpus.timeml.TempEval2007Writer
process(JCas) - Method in class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator
process(JCas) - Method in class org.cleartk.corpus.timeml.TempEval2010Writer
process(JCas) - Method in class org.cleartk.corpus.timeml.TempEval2013Writer
process(JCas) - Method in class org.cleartk.corpus.timeml.TimeMlGoldAnnotator
process(JCas) - Method in class org.cleartk.corpus.timeml.TreebankAligningAnnotator
process(JCas) - Method in class org.cleartk.examples.chunking.NamedEntityChunker
process(JCas) - Method in class org.cleartk.examples.chunking.RunNamedEntityChunker.PrintNamedEntityMentions
process(JCas) - Method in class org.cleartk.examples.chunking.util.MascGoldAnnotator
process(JCas) - Method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
process(JCas) - Method in class org.cleartk.examples.documentclassification.advanced.GoldDocumentCategoryAnnotator
process(JCas) - Method in class org.cleartk.examples.documentclassification.advanced.RunModel.PrintClassificationsAnnotator
process(JCas) - Method in class org.cleartk.examples.documentclassification.basic.BasicDocumentClassificationAnnotator
process(JCas) - Method in class org.cleartk.examples.documentclassification.basic.RunModel.PrintClassificationsAnnotator
process(JCas) - Method in class org.cleartk.examples.pos.ExamplePosAnnotator
process(JCas) - Method in class org.cleartk.examples.pos.ExamplePosPlainTextWriter
process(JCas) - Method in class org.cleartk.maltparser.MaltParser
process(JCas) - Method in class org.cleartk.opennlp.tools.ParserAnnotator
process(JCas) - Method in class org.cleartk.opennlp.tools.PosTaggerAnnotator
process(JCas) - Method in class org.cleartk.opennlp.tools.SentenceAnnotator
process(JCas) - Method in class org.cleartk.snowball.SnowballStemmer
process(JCas) - Method in class org.cleartk.stanford.corenlp.StanfordCoreNlpAnnotator
process(JCas) - Method in class org.cleartk.summarization.SumBasic.XMIReader
process(JCas) - Method in class org.cleartk.summarization.SumBasicAnnotator
process(JCas) - Method in class org.cleartk.summarization.SummarySentenceWriterAnnotator
process(JCas) - Method in class org.cleartk.timeml.eval.TempEval2010Evaluation.XMIReader
process(JCas) - Method in class org.cleartk.timeml.eval.TempEval2013Evaluation.CopyEventsAndTimes
process(JCas) - Method in class org.cleartk.timeml.eval.TempEval2013Evaluation.CopyTextAndDocumentCreationTime
process(JCas) - Method in class org.cleartk.timeml.eval.TempEval2013Evaluation.FixTimeML
process(JCas) - Method in class org.cleartk.timeml.eval.TempEval2013Evaluation.SetTemporalLinkIDs
process(JCas) - Method in class org.cleartk.timeml.eval.TempEval2013Evaluation.ShrinkTimesContainingEvents
process(JCas) - Method in class org.cleartk.timeml.eval.TempEval2013Evaluation.UseInferredTlinks
process(JCas) - Method in class org.cleartk.timeml.event.EventAnnotator
process(JCas) - Method in class org.cleartk.timeml.event.EventAttributeAnnotator
process(JCas) - Method in class org.cleartk.timeml.time.TimeAnnotator
process(JCas) - Method in class org.cleartk.timeml.time.TimeTypeAnnotator
process(JCas) - Method in class org.cleartk.timeml.TimeMlAnnotate.AddEmptyDCT
process(JCas) - Method in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase
process(JCas) - Method in class org.cleartk.timeml.tlink.VerbClauseTemporalAnnotator
process(JCas) - Method in class org.cleartk.token.breakit.BreakIteratorAnnotator
process(JCas) - Method in class org.cleartk.token.pos.PosAnnotator
process(JCas) - Method in class org.cleartk.token.tokenizer.TokenAnnotator
process(JCas) - Method in class org.cleartk.util.ae.linewriter.LineWriter
process(JCas) - Method in class org.cleartk.util.ae.parenthetical.ParentheticalAnnotator
process(JCas) - Method in class org.cleartk.util.ae.PlainTextWriter
process(JCas) - Method in class org.cleartk.util.ae.UriToDocumentTextAnnotator
process(JCas) - Method in class org.cleartk.util.ae.UriToXmiCasAnnotator
process(JCas) - Method in class org.cleartk.util.ae.XmiWriter
processText(JCas, String, int) - Method in class org.cleartk.opennlp.tools.SentenceAnnotator
Propbank - Class in org.cleartk.corpus.propbank.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Propbank() - Constructor for class org.cleartk.corpus.propbank.util.Propbank
PROPBANK_VIEW - Static variable in interface org.cleartk.corpus.propbank.PropbankConstants: The view containing the text of a PropBank "prop.txt" file.
PropbankConstants - Interface in org.cleartk.corpus.propbank: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
PropbankCorefRelation - Class in org.cleartk.corpus.propbank.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PropbankCorefRelation() - Constructor for class org.cleartk.corpus.propbank.util.PropbankCorefRelation
propbankData - Variable in class org.cleartk.corpus.propbank.PropbankGoldReader: holds all of the propbank data from props.txt.
PropbankFormatException - Exception in org.cleartk.corpus.propbank.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PropbankFormatException() - Constructor for exception org.cleartk.corpus.propbank.util.PropbankFormatException
PropbankFormatException(String) - Constructor for exception org.cleartk.corpus.propbank.util.PropbankFormatException
PropbankFormatException(Throwable) - Constructor for exception org.cleartk.corpus.propbank.util.PropbankFormatException
PropbankFormatException(String, Throwable) - Constructor for exception org.cleartk.corpus.propbank.util.PropbankFormatException
PropbankFormatWriter - Class in org.cleartk.corpus.propbank: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
PropbankFormatWriter() - Constructor for class org.cleartk.corpus.propbank.PropbankFormatWriter
PropbankGoldAnnotator - Class in org.cleartk.corpus.propbank: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PropbankGoldAnnotator() - Constructor for class org.cleartk.corpus.propbank.PropbankGoldAnnotator
PropbankGoldReader - Class in org.cleartk.corpus.propbank: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PropbankGoldReader() - Constructor for class org.cleartk.corpus.propbank.PropbankGoldReader
PropbankNodeRelation - Class in org.cleartk.corpus.propbank.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PropbankNodeRelation(int, int) - Constructor for class org.cleartk.corpus.propbank.util.PropbankNodeRelation
PropbankRelation - Class in org.cleartk.corpus.propbank.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PropbankRelation() - Constructor for class org.cleartk.corpus.propbank.util.PropbankRelation
PropbankSplitRelation - Class in org.cleartk.corpus.propbank.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PropbankSplitRelation() - Constructor for class org.cleartk.corpus.propbank.util.PropbankSplitRelation
PropbankTerminalRelation - Class in org.cleartk.corpus.propbank.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
PropbankTerminalRelation(int) - Constructor for class org.cleartk.corpus.propbank.util.PropbankTerminalRelation
Proplabel - Class in org.cleartk.corpus.propbank.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Proplabel() - Constructor for class org.cleartk.corpus.propbank.util.Proplabel
proplabels - Variable in class org.cleartk.corpus.propbank.util.Propbank
propTxt - Variable in class org.cleartk.corpus.propbank.util.Propbank
propTxt - Variable in class org.cleartk.corpus.propbank.util.Proplabel
PublicFieldDataWriter<T> - Class in org.cleartk.ml.util: A simple DataWriter that stores all instances in a public attribute.
PublicFieldDataWriter() - Constructor for class org.cleartk.ml.util.PublicFieldDataWriter
PublicFieldDataWriter.BooleanFactory - Class in org.cleartk.ml.util: Returns a single static instance of InstanceCollector.
PublicFieldDataWriter.BooleanFactory() - Constructor for class org.cleartk.ml.util.PublicFieldDataWriter.BooleanFactory
PublicFieldDataWriter.StringFactory - Class in org.cleartk.ml.util: Returns a single static instance of InstanceCollector.
PublicFieldDataWriter.StringFactory() - Constructor for class org.cleartk.ml.util.PublicFieldDataWriter.StringFactory
PublicFieldSequenceDataWriter<T> - Class in org.cleartk.ml.util: A simple SequenceDataWriter that stores all instances in a public attribute.
PublicFieldSequenceDataWriter() - Constructor for class org.cleartk.ml.util.PublicFieldSequenceDataWriter
PublicFieldSequenceDataWriter.BooleanFactory - Class in org.cleartk.ml.util: Returns a single static instance of InstanceCollector.
PublicFieldSequenceDataWriter.BooleanFactory() - Constructor for class org.cleartk.ml.util.PublicFieldSequenceDataWriter.BooleanFactory
PublicFieldSequenceDataWriter.StringFactory - Class in org.cleartk.ml.util: Returns a single static instance of InstanceCollector.
PublicFieldSequenceDataWriter.StringFactory() - Constructor for class org.cleartk.ml.util.PublicFieldSequenceDataWriter.StringFactory
put(String, String) - Method in class org.cleartk.util.collection.CompressedStringBiMap
putAll(Map<? extends String, ? extends String>) - Method in class org.cleartk.util.collection.CompressedStringBiMap
putNextJarEntry(JarOutputStream, String, File) - Static method in class org.cleartk.ml.jar.JarStreams

Q

QidInstance<OUTCOME> - Class in org.cleartk.ml.svmlight.rank: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
QidInstance() - Constructor for class org.cleartk.ml.svmlight.rank.QidInstance
quotePattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
quoteRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer

R

RangeSpecification - Class in org.cleartk.corpus.penntreebank: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
RangeSpecification(String) - Constructor for class org.cleartk.corpus.penntreebank.RangeSpecification
RbfKernel - Class in org.cleartk.ml.svmlight.model: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
RbfKernel(double) - Constructor for class org.cleartk.ml.svmlight.model.RbfKernel
read(Reader) - Method in class org.cleartk.util.collection.CompressedStringBiMap
recall() - Method in class org.cleartk.eval.AnnotationStatistics
recall(OUTCOME_TYPE) - Method in class org.cleartk.eval.AnnotationStatistics
ReflectionUtil - Class in org.cleartk.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
ReflectionUtil() - Constructor for class org.cleartk.util.ReflectionUtil
ReflectionUtil.TypeArgumentDelegator - Interface in org.cleartk.util
RegexFileFilter - Class in org.cleartk.util.cr: Filters files using supplied regular expression(s).
RegexFileFilter(String) - Constructor for class org.cleartk.util.cr.RegexFileFilter: Construct a new regular expression filter.
RegexFileFilter(String, IOCase) - Constructor for class org.cleartk.util.cr.RegexFileFilter: Construct a new regular expression filter with the specified flags case sensitivity.
RegexFileFilter(String, int) - Constructor for class org.cleartk.util.cr.RegexFileFilter: Construct a new regular expression filter with the specified flags.
RegexFileFilter(Pattern) - Constructor for class org.cleartk.util.cr.RegexFileFilter: Construct a new regular expression filter for a compiled regular expression
relation - Variable in class org.cleartk.corpus.propbank.util.Proplabel
relations - Variable in class org.cleartk.corpus.propbank.util.PropbankSplitRelation
RelativePositionExtractor<T extends Annotation,U extends Annotation> - Class in org.cleartk.ml.feature.extractor: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
RelativePositionExtractor() - Constructor for class org.cleartk.ml.feature.extractor.RelativePositionExtractor
remove() - Method in class org.cleartk.corpus.genia.pos.util.GeniaPosParser
remove() - Method in class org.cleartk.ml.feature.transform.InstanceStream.Iterator
remove() - Method in class org.cleartk.ml.mallet.InstanceListCreator.DataIterator
removeInconsistentAttributes(Element, Annotation, JCas) - Static method in class org.cleartk.corpus.timeml.TimeMlUtil
REVERSE_RELATION - Static variable in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase
RIGHTOF - Static variable in class org.cleartk.ml.feature.extractor.RelativePositionExtractor
rootFile - Variable in class org.cleartk.util.cr.FilesCollectionReader
run() - Method in class org.cleartk.util.InputStreamHandler: read data into buffer
RunExamplePosAnnotator - Class in org.cleartk.examples.pos: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
RunExamplePosAnnotator() - Constructor for class org.cleartk.examples.pos.RunExamplePosAnnotator
runMain(String[]) - Method in class org.cleartk.timeml.eval.TempEval2010Main
RunModel - Class in org.cleartk.examples.documentclassification.advanced: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
RunModel() - Constructor for class org.cleartk.examples.documentclassification.advanced.RunModel
RunModel - Class in org.cleartk.examples.documentclassification.basic: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
RunModel() - Constructor for class org.cleartk.examples.documentclassification.basic.RunModel
RunModel.Options - Interface in org.cleartk.examples.documentclassification.advanced
RunModel.Options - Interface in org.cleartk.examples.documentclassification.basic
RunModel.PrintClassificationsAnnotator - Class in org.cleartk.examples.documentclassification.advanced
RunModel.PrintClassificationsAnnotator() - Constructor for class org.cleartk.examples.documentclassification.advanced.RunModel.PrintClassificationsAnnotator
RunModel.PrintClassificationsAnnotator - Class in org.cleartk.examples.documentclassification.basic
RunModel.PrintClassificationsAnnotator() - Constructor for class org.cleartk.examples.documentclassification.basic.RunModel.PrintClassificationsAnnotator
RunNamedEntityChunker - Class in org.cleartk.examples.chunking: This class provides a main method that demonstrates how to run a trained NamedEntityChunker on new files.
RunNamedEntityChunker() - Constructor for class org.cleartk.examples.chunking.RunNamedEntityChunker
RunNamedEntityChunker.Options - Interface in org.cleartk.examples.chunking
RunNamedEntityChunker.PrintNamedEntityMentions - Class in org.cleartk.examples.chunking: A simple annotator that just prints out any NamedEntityMentions in the CAS.
RunNamedEntityChunker.PrintNamedEntityMentions() - Constructor for class org.cleartk.examples.chunking.RunNamedEntityChunker.PrintNamedEntityMentions

S

save(URI) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats
save(URI) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor
save(URI) - Method in class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor
save(URI) - Method in class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor
save(URI) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor.IDFMap
save(URI) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor
save(URI) - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor
save(URI) - Method in interface org.cleartk.ml.feature.transform.TrainableExtractor: Saves statistics from train in location URI
save(URI) - Method in class org.cleartk.summarization.SumBasicModel.TermFrequencyMap
saveToTrainingDirectory(File) - Method in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
saveToTrainingDirectory(File) - Method in class org.cleartk.ml.jar.JarClassifierBuilder: Write all information stored in the classifier builder to the training directory.
saveToTrainingDirectory(File) - Method in class org.cleartk.ml.viterbi.ViterbiClassifierBuilder
SCALE_FEATURES_KEY - Static variable in class org.cleartk.ml.libsvm.LibSvmClassifierBuilder
SCALE_FEATURES_VALUE_NORMALIZEL2 - Static variable in class org.cleartk.ml.libsvm.LibSvmClassifierBuilder
score(List<Feature>) - Method in class org.cleartk.ml.baseline.SingleOutcomeClassifier
score(List<Feature>) - Method in interface org.cleartk.ml.Classifier: Classify a list of features, and return the scores for each of the outcomes
score(List<Feature>) - Method in class org.cleartk.ml.jar.Classifier_ImplBase
score(List<List<Feature>>) - Method in class org.cleartk.ml.jar.SequenceClassifier_ImplBase
score(List<Feature>) - Method in class org.cleartk.ml.liblinear.GenericLibLinearClassifier
score(List<Feature>) - Method in class org.cleartk.ml.libsvm.LibSvmClassifier
score(List<Feature>) - Method in class org.cleartk.ml.mallet.MalletClassifier_ImplBase
score(List<Feature>) - Method in class org.cleartk.ml.opennlp.maxent.MaxentClassifier_ImplBase
score(List<List<Feature>>) - Method in interface org.cleartk.ml.SequenceClassifier: Classify a sequence of feature lists, and return the scores for each of the outcomes for each feature list.
score(List<Feature>) - Method in class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeClassifier
score(List<Feature>) - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeClassifier
score(List<Feature>) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmBooleanOutcomeClassifier
score(List<Feature>) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifier: Score a list of features against the various models used by the One Verse All SVM classifier.
score(List<List<Feature>>) - Method in class org.cleartk.ml.viterbi.ViterbiClassifier
score(List<Feature>) - Method in class org.cleartk.ml.weka.WekaStringOutcomeClassifier
score(List<Feature>) - Method in class org.cleartk.summarization.classifier.SummarizationClassifier
sections - Variable in class org.cleartk.corpus.penntreebank.PennTreebankReader
select(JCas, Annotation, Class<T>, int) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.FirstCovered
select(JCas, Annotation, Class<T>, int) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Following
select(JCas, Annotation, Class<T>, int) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.LastCovered
select(JCas, Annotation, Class<T>, int) - Method in class org.cleartk.ml.feature.extractor.CleartkExtractor.Preceding
selectedFileNames - Variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
selectedSentencesScores - Variable in class org.cleartk.summarization.classifier.SummarizationClassifier
selectedSentencesScores - Variable in class org.cleartk.summarization.SummarizationModel_ImplBase
selectFirstMatching(JCas, Class<T>, Annotation) - Static method in class org.cleartk.util.AnnotationUtil
selectFoldTestItems(List<ITEM_TYPE>, int, int) - Method in class org.cleartk.eval.Evaluation_ImplBase: Determines which items should be used for testing in one fold of a cross-validation.
selectFoldTrainItems(List<ITEM_TYPE>, int, int) - Method in class org.cleartk.eval.Evaluation_ImplBase: Determines which items should be used for training in one fold of a cross-validation.
selectHighestCoveredTreebankNode(JCas, Annotation) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Selects the highest TreebankNode in the parse tree that is at least partially covered by the given annotation.
selectHighestMatchingTreebankNode(JCas, Annotation) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Selects the highest TreebankNode in the parse tree that has the same span as the given annotation.
selectMatching(JCas, Class<T>, Annotation) - Static method in class org.cleartk.util.AnnotationUtil
selectMatchingLeaf(JCas, Annotation) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil: Selects a single TreebankNode leaf that has the same span as the given annotation.
selectNodes(JCas, Annotation) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
selectNodes(JCas, Annotation) - Method in interface org.cleartk.clearnlp.DependencyOps: Selects all dependency nodes within the annotation, excluding the root node.
selectRootNode(JCas, Annotation) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
selectRootNode(JCas, Annotation) - Method in interface org.cleartk.clearnlp.DependencyOps: Selects the single root node within the annotation.
selectTokens(JCas, Annotation) - Method in class org.cleartk.clearnlp.CleartkTokenOps
selectTokens(JCas, Annotation) - Method in interface org.cleartk.clearnlp.TokenOps
selectTransformableFeatures(Instance<OUTCOME_T>) - Method in class org.cleartk.ml.feature.transform.TrainableExtractor_ImplBase: Recursively look through all features in an instance to find the features this extractor is responsible for extracting
SemanticRoleLabeler - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
SemanticRoleLabeler() - Constructor for class org.cleartk.clearnlp.SemanticRoleLabeler
SemanticRoleLabeler_ImplBase<WINDOW_TYPE extends Annotation,TOKEN_TYPE extends Annotation,DEPENDENCY_NODE_TYPE extends TOP,DEPENDENCY_ROOT_NODE_TYPE extends DEPENDENCY_NODE_TYPE,DEPENDENCY_RELATION_TYPE extends TOP,ARGUMENT_TYPE extends TOP,PREDICATE_TYPE extends TOP> - Class in org.cleartk.clearnlp: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
SemanticRoleLabeler_ImplBase(TokenOps<TOKEN_TYPE>, DependencyOps<DEPENDENCY_NODE_TYPE, TOKEN_TYPE, DEPENDENCY_ROOT_NODE_TYPE, WINDOW_TYPE, DEPENDENCY_RELATION_TYPE>, SemanticRoleOps<ARGUMENT_TYPE, TOKEN_TYPE, PREDICATE_TYPE, TOKEN_TYPE>) - Constructor for class org.cleartk.clearnlp.SemanticRoleLabeler_ImplBase
SemanticRoleOps<ARGUMENT_TYPE extends TOP,ARGUMENT_SPAN_TYPE extends Annotation,PREDICATE_TYPE extends TOP,PREDICATE_SPAN_TYPE extends Annotation> - Interface in org.cleartk.clearnlp: Defines common set of SRL data type operations used to convert output from semantic role labelers into the target type system
SentenceAnnotator - Class in org.cleartk.opennlp.tools: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
SentenceAnnotator() - Constructor for class org.cleartk.opennlp.tools.SentenceAnnotator
sentenceNumber - Variable in class org.cleartk.corpus.propbank.util.Propbank
sentenceType - Variable in class org.cleartk.token.pos.PosAnnotator
SequenceClassifier<OUTCOME_TYPE> - Interface in org.cleartk.ml: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
SequenceClassifier_ImplBase<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for SequenceClassifier implementations that use FeaturesEncoders and OutcomeEncoders.
SequenceClassifier_ImplBase(FeaturesEncoder<ENCODED_FEATURES_TYPE>, OutcomeEncoder<OUTCOME_TYPE, ENCODED_OUTCOME_TYPE>) - Constructor for class org.cleartk.ml.jar.SequenceClassifier_ImplBase
SequenceClassifierBuilder_ImplBase<CLASSIFIER_TYPE extends SequenceClassifier<OUTCOME_TYPE>,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for builders which write to a training data file using FeaturesEncoders and OutcomeEncoders, and build and package SequenceClassifiers as jar files.
SequenceClassifierBuilder_ImplBase() - Constructor for class org.cleartk.ml.jar.SequenceClassifierBuilder_ImplBase
SequenceClassifierFactory<OUTCOME_TYPE> - Interface in org.cleartk.ml: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
SequenceDataWriter<OUTCOME_TYPE> - Interface in org.cleartk.ml: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
SequenceDataWriter_ImplBase<CLASSIFIER_BUILDER_TYPE extends EncodingJarClassifierBuilder<? extends SequenceClassifier<OUTCOME_TYPE>,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>,ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for SequenceDataWriter implementations that write training data to a file using FeaturesEncoders and OutcomeEncoders.
SequenceDataWriter_ImplBase(File) - Constructor for class org.cleartk.ml.jar.SequenceDataWriter_ImplBase
SequenceDataWriterFactory<OUTCOME_TYPE> - Interface in org.cleartk.ml: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
SequenceDataWriterFactory_ImplBase<ENCODED_FEATURES_TYPE,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Superclass for SequenceDataWriterFactory implementations that use FeaturesEncoders and OutcomeEncoders.
SequenceDataWriterFactory_ImplBase() - Constructor for class org.cleartk.ml.jar.SequenceDataWriterFactory_ImplBase
SequenceJarClassifierFactory<OUTCOME_TYPE> - Class in org.cleartk.ml.jar: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SequenceJarClassifierFactory() - Constructor for class org.cleartk.ml.jar.SequenceJarClassifierFactory
set(int, double) - Method in class org.cleartk.ml.util.featurevector.ArrayFeatureVector
set(int, double) - Method in class org.cleartk.ml.util.featurevector.FeatureVector: Set the feature at index to value.
set(int, double) - Method in class org.cleartk.ml.util.featurevector.SparseFeatureVector
setAceDirectoryName(String) - Method in class org.cleartk.corpus.ace2005.Ace2005GoldReader
setAceFileNamesFile(String) - Method in class org.cleartk.corpus.ace2005.Ace2005GoldReader
setArch(String) - Method in class org.cleartk.util.PlatformDetection
setAttribute(Event, String) - Method in class org.cleartk.timeml.event.EventAspectAnnotator
setAttribute(Event, OUTCOME_TYPE) - Method in class org.cleartk.timeml.event.EventAttributeAnnotator: Set the attribute value on the Event annotation.
setAttribute(Event, String) - Method in class org.cleartk.timeml.event.EventClassAnnotator
setAttribute(Event, String) - Method in class org.cleartk.timeml.event.EventModalityAnnotator
setAttribute(Event, String) - Method in class org.cleartk.timeml.event.EventPolarityAnnotator
setAttribute(Event, String) - Method in class org.cleartk.timeml.event.EventTenseAnnotator
setBaseForm(String) - Method in class org.cleartk.corpus.propbank.util.Propbank
setBetweenExtractors(List<FeatureExtractor2<Anchor, Anchor>>) - Method in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase
setChildRelations(JCas, DependencyNode, List<DependencyRelation>) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
setChildRelations(JCas, NODE_TYPE, List<RELATION_TYPE>) - Method in interface org.cleartk.clearnlp.DependencyOps: Sets the head relations for a given node.
setChildren(List<TreebankNode>) - Method in class org.cleartk.util.treebank.TreebankNode
setClassifierJarPath(String) - Method in class org.cleartk.ml.jar.GenericJarClassifierFactory
setCorpusDirectoryName(String) - Method in class org.cleartk.corpus.penntreebank.PennTreebankReader
setDataFileName(String) - Method in class org.cleartk.corpus.conll2003.Conll2003GoldReader
setDelegatedDataWriter(DataWriter<OUTCOME_TYPE>) - Method in class org.cleartk.ml.viterbi.ViterbiDataWriter
setEncodersFromFileSystem(EncodingDirectoryDataWriter<?, ?, ENCODED_FEATURES_TYPE, OUTCOME_TYPE, ENCODED_OUTCOME_TYPE>) - Method in class org.cleartk.ml.jar.EncodingDirectoryDataWriterFactory
setFeature(String) - Method in class org.cleartk.corpus.propbank.util.Proplabel
setFeatureExtractorClassName(String) - Method in class org.cleartk.token.pos.PosAnnotator
setFeatures(FeatureVector) - Method in class org.cleartk.ml.tksvmlight.TreeFeatureVector: Sets the non-tree features.
setFeaturesEncoder(FeaturesEncoder<ENCODED_FEATURES_TYPE>) - Method in class org.cleartk.ml.jar.EncodingDirectoryDataWriter
setFeaturesEncoder(FeaturesEncoder<ENCODED_FEATURES_TYPE>) - Method in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
setFilename(String) - Method in class org.cleartk.corpus.propbank.util.Propbank
setFrameSet(String) - Method in class org.cleartk.corpus.propbank.util.Propbank
setHeadRelations(JCas, DependencyNode, List<DependencyRelation>) - Method in class org.cleartk.clearnlp.CleartkDependencyOps
setHeadRelations(JCas, NODE_TYPE, List<RELATION_TYPE>) - Method in interface org.cleartk.clearnlp.DependencyOps: Sets the head relations for a given node.
setHeight(int) - Method in class org.cleartk.corpus.propbank.util.PropbankNodeRelation
setHyphenTag(String) - Method in class org.cleartk.corpus.propbank.util.Proplabel
setInflectionValue(String) - Method in class org.cleartk.corpus.propbank.util.Propbank
setLabel(String) - Method in class org.cleartk.corpus.genia.pos.util.GeniaTag
setLabel(String) - Method in class org.cleartk.corpus.propbank.util.Proplabel
setLeaf(boolean) - Method in class org.cleartk.util.treebank.TreebankNode
setLemma(JCas, Token, String) - Method in class org.cleartk.clearnlp.CleartkTokenOps
setLemma(JCas, TOKEN_TYPE, String) - Method in interface org.cleartk.clearnlp.TokenOps
setLoadNamedEntities(boolean) - Method in class org.cleartk.corpus.conll2003.Conll2003GoldReader
setLoadTlinks(boolean) - Method in class org.cleartk.corpus.timeml.TimeMlGoldAnnotator
setMedline(String) - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
setName(String) - Method in class org.cleartk.ml.Feature
setNormalizer(NameNumberNormalizer) - Method in class org.cleartk.ml.encoder.features.FeatureVectorFeaturesEncoder
setNormalizer(NameNumberNormalizer) - Method in class org.cleartk.ml.tksvmlight.TreeFeatureVectorFeaturesEncoder
setOs(String) - Method in class org.cleartk.util.PlatformDetection
setOutcome(OUTCOME_TYPE) - Method in class org.cleartk.ml.Instance: Set the current label for the instance.
setOutcomeEncoder(OutcomeEncoder<OUTCOME_TYPE, ENCODED_OUTCOME_TYPE>) - Method in class org.cleartk.ml.jar.EncodingDirectoryDataWriter
setOutcomeEncoder(OutcomeEncoder<OUTCOME_TYPE, ENCODED_OUTCOME_TYPE>) - Method in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
setOutcomeFeatureExtractors(OutcomeFeatureExtractor[]) - Method in class org.cleartk.ml.viterbi.ViterbiClassifierBuilder
setOutputDirectory(File) - Method in class org.cleartk.ml.jar.DirectoryDataWriterFactory
setOutputDirectoryName(String) - Method in class org.cleartk.corpus.ace2005.Ace2005Writer
setOutputDirectoryName(String) - Method in class org.cleartk.corpus.timeml.TempEval2007Writer
setOutputDirectoryName(String) - Method in class org.cleartk.examples.pos.ExamplePosPlainTextWriter
setOutputDirectoryName(String) - Method in class org.cleartk.util.ae.PlainTextWriter
setParent(TreebankNode) - Method in class org.cleartk.util.treebank.TreebankNode
setParseBegin(int) - Method in class org.cleartk.util.treebank.TreebankNode
setParseEnd(int) - Method in class org.cleartk.util.treebank.TreebankNode
setPenntreebankDirectoryName(String) - Method in class org.cleartk.corpus.propbank.PropbankGoldReader
setPos(JCas, Token, String) - Method in class org.cleartk.clearnlp.CleartkTokenOps
setPos(JCas, TOKEN_TYPE, String) - Method in interface org.cleartk.clearnlp.TokenOps
setPosTag(Token, String) - Method in class org.cleartk.berkeleyparser.DefaultInputTypesHelper
setPosTag(TOKEN_TYPE, String) - Method in class org.cleartk.berkeleyparser.InputTypesHelper
setPosTag(Token, String) - Method in class org.cleartk.opennlp.tools.parser.DefaultInputTypesHelper
setPosTag(TOKEN_TYPE, String) - Method in class org.cleartk.opennlp.tools.parser.InputTypesHelper
setPOSTags(Parse, Iterator<TOKEN_TYPE>, JCas) - Method in class org.cleartk.opennlp.tools.ParserAnnotator
setPredicateArguments(JCas, Predicate, List<SemanticArgument>) - Method in class org.cleartk.clearnlp.CleartkSemanticRoleOps
setPredicateArguments(JCas, PREDICATE_TYPE, List<ARGUMENT_TYPE>) - Method in interface org.cleartk.clearnlp.SemanticRoleOps
setPreposition(String) - Method in class org.cleartk.corpus.propbank.util.Proplabel
setPropbankFileName(String) - Method in class org.cleartk.corpus.propbank.PropbankGoldReader
setPropLabels(List<Proplabel>) - Method in class org.cleartk.corpus.propbank.util.Propbank
setPropTxt(String) - Method in class org.cleartk.corpus.propbank.util.Propbank
setPropTxt(String) - Method in class org.cleartk.corpus.propbank.util.Proplabel
setQid(String) - Method in class org.cleartk.ml.svmlight.rank.QidInstance
setRelation(PropbankRelation) - Method in class org.cleartk.corpus.propbank.util.Proplabel
setSectionsSpecifier(String) - Method in class org.cleartk.corpus.penntreebank.PennTreebankReader
setSentenceNumber(int) - Method in class org.cleartk.corpus.propbank.util.Propbank
setSentencesOutFile(File, boolean) - Method in class org.cleartk.summarization.SumBasic
setSourceExtractors(List<FeatureExtractor1<SOURCE>>) - Method in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase
setSpan(Span) - Method in class org.cleartk.corpus.genia.pos.util.GeniaSentence
setSpans(List<Span>) - Method in class org.cleartk.corpus.genia.pos.util.GeniaTag
setStem(Token, String) - Method in class org.cleartk.snowball.DefaultSnowballStemmer
setStem(TOKEN_TYPE, String) - Method in class org.cleartk.snowball.SnowballStemmer
setStemmerName(String) - Method in class org.cleartk.snowball.SnowballStemmer
setTag(JCas, Token, String) - Method in class org.cleartk.token.pos.impl.DefaultPosAnnotator
setTag(JCas, TOKEN_TYPE, String) - Method in class org.cleartk.token.pos.PosAnnotator
setTaggerName(String) - Method in class org.cleartk.corpus.propbank.util.Propbank
setTags(String[]) - Method in class org.cleartk.util.treebank.TreebankNode
setTargetExtractors(List<FeatureExtractor1<TARGET>>) - Method in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase
setTerminal(PropbankRelation) - Method in class org.cleartk.corpus.propbank.util.Propbank
setTerminalNumber(int) - Method in class org.cleartk.corpus.propbank.util.PropbankNodeRelation
setTerminalNumber(int) - Method in class org.cleartk.corpus.propbank.util.PropbankTerminalRelation
setText(String) - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
setText(String) - Method in class org.cleartk.util.treebank.TreebankNode
setTextBegin(int) - Method in class org.cleartk.util.treebank.TreebankNode: the offset of the plain text for this node with respect to the sentence text adjusted by the textOffset passed into the parse method.
setTextEnd(int) - Method in class org.cleartk.util.treebank.TreebankNode
setTlinkFileUrl(String) - Method in class org.cleartk.corpus.timeml.PlainTextTlinkGoldAnnotator
setTokenizerName(String) - Method in class org.cleartk.token.tokenizer.TokenAnnotator
setTokens(List<TOKEN_TYPE>) - Method in class org.cleartk.opennlp.tools.parser.CasPosTagger
setTokenTypeName(String) - Method in class org.cleartk.token.tokenizer.TokenAnnotator
setTopNode(TopTreebankNode) - Method in class org.cleartk.util.treebank.TreebankNode
setTreebankDirectoryName(String) - Method in class org.cleartk.corpus.timeml.TreebankAligningAnnotator
setTreebankParse(String) - Method in class org.cleartk.util.treebank.TopTreebankNode
setTrees(LinkedHashMap<String, String>) - Method in class org.cleartk.ml.tksvmlight.TreeFeatureVector: Set the trees.
setType(String) - Method in class org.cleartk.util.treebank.TreebankNode
setUp() - Method in class org.cleartk.test.util.CleartkTestBase
setUp() - Method in class org.cleartk.test.util.DefaultTestBase
setURI(CAS, URI) - Static method in class org.cleartk.util.ViewUriUtil: Set the primary Uniform Resource Identifier for this CAS and all its views.
setURI(JCas, URI) - Static method in class org.cleartk.util.ViewUriUtil: Set the primary Uniform Resource Identifier for this JCas and all its views.
setUseCache(boolean) - Method in class org.cleartk.ml.tksvmlight.model.TreeKernel
setValue(Object) - Method in class org.cleartk.ml.Feature
setValue(Object) - Method in class org.cleartk.ml.feature.transform.TransformableFeature
setValue(String) - Method in class org.cleartk.util.treebank.TreebankNode
setWindowTypeName(String) - Method in class org.cleartk.token.tokenizer.TokenAnnotator
setWsjSections(String) - Method in class org.cleartk.corpus.propbank.PropbankGoldReader
setXml(String) - Method in class org.cleartk.corpus.genia.pos.util.GeniaParse
SiblingExtractor - Class in org.cleartk.feature.syntax: Copyright (c) 2007-2009, Regents of the University of Colorado
All rights reserved.
SiblingExtractor(int, FeatureExtractor1<TreebankNode>) - Constructor for class org.cleartk.feature.syntax.SiblingExtractor
Sigmoid - Class in org.cleartk.ml.sigmoid: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
Sigmoid(double, double) - Constructor for class org.cleartk.ml.sigmoid.Sigmoid
sigmoid - Variable in class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeClassifier
sigmoid - Variable in class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeClassifierBuilder
SigmoidKernel - Class in org.cleartk.ml.svmlight.model: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
SigmoidKernel(double, double) - Constructor for class org.cleartk.ml.svmlight.model.SigmoidKernel
similarity(String, String) - Static method in class org.cleartk.util.similarity.Levenshtein
SimilarityFunction - Interface in org.cleartk.ml.feature.transform.extractor: Copyright (c) 2012, Regents of the University of Colorado
All rights reserved.
SimpleLineHandler - Class in org.cleartk.util.cr.linereader: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
SimpleLineHandler() - Constructor for class org.cleartk.util.cr.linereader.SimpleLineHandler
SingleOutcomeClassifier<OUTCOME_TYPE> - Class in org.cleartk.ml.baseline: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SingleOutcomeClassifier(OUTCOME_TYPE) - Constructor for class org.cleartk.ml.baseline.SingleOutcomeClassifier
SingleOutcomeClassifierBuilder<OUTCOME_TYPE> - Class in org.cleartk.ml.baseline: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SingleOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.baseline.SingleOutcomeClassifierBuilder
singleQuotePattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
singleQuoteRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer
size(Annotation) - Static method in class org.cleartk.util.AnnotationUtil
SKIP_TESTS_PROPERTY - Static variable in class org.cleartk.test.util.CleartkTestBase: The name of the property that can be set to skip some tests.
smoothingCount - Variable in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats
SnowballStemmer<TOKEN_TYPE extends Annotation> - Class in org.cleartk.snowball: This class borrows from SnowballFilter
Copyright (c) 2007-2009, Regents of the University of Colorado
All rights reserved.
SnowballStemmer() - Constructor for class org.cleartk.snowball.SnowballStemmer
someDigitsPattern - Static variable in class org.cleartk.ml.feature.util.NumericTypeUtil
sort(List<T>) - Static method in class org.cleartk.util.AnnotationUtil
source - Variable in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase.SourceTargetPair
sourceExtractors - Variable in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase
Span - Class in org.cleartk.corpus.genia.pos.util: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Span(int, int) - Constructor for class org.cleartk.corpus.genia.pos.util.Span
SparseFeatureVector - Class in org.cleartk.ml.util.featurevector: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
SparseFeatureVector() - Constructor for class org.cleartk.ml.util.featurevector.SparseFeatureVector
SparseFeatureVector(FeatureVector) - Constructor for class org.cleartk.ml.util.featurevector.SparseFeatureVector
splitSentences(String) - Static method in class org.cleartk.util.treebank.TreebankFormatParser: Generally speaking, we expect one treebanked sentence per line.
stackSize - Variable in class org.cleartk.ml.viterbi.ViterbiClassifier
StanfordCoreNlpAnnotator - Class in org.cleartk.stanford.corenlp: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
StanfordCoreNlpAnnotator() - Constructor for class org.cleartk.stanford.corenlp.StanfordCoreNlpAnnotator
stddev - Variable in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanStddevTuple
stddev() - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat
stddevPop() - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat
stemmerName - Variable in class org.cleartk.snowball.SnowballStemmer
StopwordRemovingExtractor<FOCUS_T extends Annotation> - Class in org.cleartk.summarization: Feature that will prevent extraction with the subExtractor if the covered annotation text is a stopword
StopwordRemovingExtractor(Set<String>, FeatureExtractor1<FOCUS_T>) - Constructor for class org.cleartk.summarization.StopwordRemovingExtractor
stopwordsUri - Variable in class org.cleartk.summarization.SumBasicAnnotator
StringArrayToStringArrayEncoder - Class in org.cleartk.ml.encoder.outcome: Copyright (c) 2010, University of Würzburg
All rights reserved.
StringArrayToStringArrayEncoder() - Constructor for class org.cleartk.ml.encoder.outcome.StringArrayToStringArrayEncoder
StringEncoder - Class in org.cleartk.ml.encoder.features: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
StringEncoder() - Constructor for class org.cleartk.ml.encoder.features.StringEncoder
StringMapper - Interface in org.cleartk.util.collection: Copyright (c) 2010, Regents of the University of Colorado
All rights reserved.
StringToIntegerOutcomeEncoder - Class in org.cleartk.ml.encoder.outcome: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
StringToIntegerOutcomeEncoder() - Constructor for class org.cleartk.ml.encoder.outcome.StringToIntegerOutcomeEncoder
StringToIntegerOutcomeEncoder(int) - Constructor for class org.cleartk.ml.encoder.outcome.StringToIntegerOutcomeEncoder
StringToStringOutcomeEncoder - Class in org.cleartk.ml.encoder.outcome: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
StringToStringOutcomeEncoder() - Constructor for class org.cleartk.ml.encoder.outcome.StringToStringOutcomeEncoder
stringToUri - Variable in class org.cleartk.util.cr.UriCollectionReader
SubCategorizationExtractor - Class in org.cleartk.feature.syntax: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
SubCategorizationExtractor(String) - Constructor for class org.cleartk.feature.syntax.SubCategorizationExtractor
SubCategorizationExtractor() - Constructor for class org.cleartk.feature.syntax.SubCategorizationExtractor
subChunkClass - Variable in class org.cleartk.ml.chunking.Chunking_ImplBase
subExtractor - Variable in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor
Subtokenizer - Class in org.cleartk.token.tokenizer: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
Subtokenizer() - Constructor for class org.cleartk.token.tokenizer.Subtokenizer
subtokensPattern - Static variable in class org.cleartk.token.tokenizer.Subtokenizer
subtokensRegex - Static variable in class org.cleartk.token.tokenizer.Subtokenizer
SumBasic - Class in org.cleartk.summarization
SumBasic(File, File, File, File, SumBasicAnnotator.TokenField) - Constructor for class org.cleartk.summarization.SumBasic
SumBasic.Options - Interface in org.cleartk.summarization
SumBasic.XMIReader - Class in org.cleartk.summarization
SumBasic.XMIReader() - Constructor for class org.cleartk.summarization.SumBasic.XMIReader
SumBasicAnnotator - Class in org.cleartk.summarization: Copyright (c) 2007-2012, Regents of the University of Colorado
All rights reserved.
SumBasicAnnotator() - Constructor for class org.cleartk.summarization.SumBasicAnnotator
SumBasicAnnotator.TokenField - Enum in org.cleartk.summarization
SumBasicClassifierBuilder - Class in org.cleartk.summarization.classifier
SumBasicClassifierBuilder() - Constructor for class org.cleartk.summarization.classifier.SumBasicClassifierBuilder
SumBasicDataWriter - Class in org.cleartk.summarization.classifier
SumBasicDataWriter(File) - Constructor for class org.cleartk.summarization.classifier.SumBasicDataWriter
SumBasicModel - Class in org.cleartk.summarization: This model is based on the SumBasic model described in:
SumBasicModel(Map<List<Feature>, Double>) - Constructor for class org.cleartk.summarization.SumBasicModel
SumBasicModel(InputStream) - Constructor for class org.cleartk.summarization.SumBasicModel
SumBasicModel.CompositionFunctionType - Enum in org.cleartk.summarization: SumBasic can use three different Composition Functions to combine the probabilities for words in a sentence.
SumBasicModel.Options - Interface in org.cleartk.summarization
SumBasicModel.TermFrequencyMap - Class in org.cleartk.summarization
SumBasicModel.TermFrequencyMap() - Constructor for class org.cleartk.summarization.SumBasicModel.TermFrequencyMap
SummarizationClassifier<MODEL_TYPE extends SummarizationModel_ImplBase> - Class in org.cleartk.summarization.classifier
SummarizationClassifier(MODEL_TYPE) - Constructor for class org.cleartk.summarization.classifier.SummarizationClassifier
SummarizationClassifierBuilder<MODEL_TYPE extends SummarizationModel_ImplBase> - Class in org.cleartk.summarization.classifier
SummarizationClassifierBuilder() - Constructor for class org.cleartk.summarization.classifier.SummarizationClassifierBuilder
SummarizationDataWriter<MODEL_TYPE extends SummarizationModel_ImplBase,CLASSIFIER_BUILDER_TYPE extends SummarizationClassifierBuilder<MODEL_TYPE>> - Class in org.cleartk.summarization.classifier
SummarizationDataWriter(File) - Constructor for class org.cleartk.summarization.classifier.SummarizationDataWriter
SummarizationModel_ImplBase - Class in org.cleartk.summarization: Base class for summarization models.
SummarizationModel_ImplBase(Map<List<Feature>, Double>) - Constructor for class org.cleartk.summarization.SummarizationModel_ImplBase
SummarizationModel_ImplBase(InputStream) - Constructor for class org.cleartk.summarization.SummarizationModel_ImplBase
Summarize_ImplBase<ITEM_TYPE> - Class in org.cleartk.summarization: A base class for training and running a sentence extraction based summarizer.
Summarize_ImplBase() - Constructor for class org.cleartk.summarization.Summarize_ImplBase
SummarySentenceWriterAnnotator - Class in org.cleartk.summarization
SummarySentenceWriterAnnotator() - Constructor for class org.cleartk.summarization.SummarySentenceWriterAnnotator
SupportVector - Class in org.cleartk.ml.svmlight.model: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
SupportVector(double, FeatureVector) - Constructor for class org.cleartk.ml.svmlight.model.SupportVector
SvmLightBooleanOutcomeClassifier - Class in org.cleartk.ml.svmlight: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
SvmLightBooleanOutcomeClassifier(FeaturesEncoder<FeatureVector>, OutcomeEncoder<Boolean, Boolean>, SvmLightModel, Sigmoid) - Constructor for class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeClassifier
SvmLightBooleanOutcomeClassifierBuilder - Class in org.cleartk.ml.svmlight: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
SvmLightBooleanOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeClassifierBuilder
SvmLightBooleanOutcomeDataWriter - Class in org.cleartk.ml.svmlight: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
SvmLightBooleanOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeDataWriter
SvmLightClassifier_ImplBase<OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.svmlight: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SvmLightClassifier_ImplBase(FeaturesEncoder<FeatureVector>, OutcomeEncoder<OUTCOME_TYPE, ENCODED_OUTCOME_TYPE>, SvmLightModel) - Constructor for class org.cleartk.ml.svmlight.SvmLightClassifier_ImplBase
SvmLightClassifierBuilder_ImplBase<CLASSIFIER_TYPE extends Classifier<OUTCOME_TYPE>,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.svmlight: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
SvmLightClassifierBuilder_ImplBase() - Constructor for class org.cleartk.ml.svmlight.SvmLightClassifierBuilder_ImplBase
SvmLightDataWriter_ImplBase<CLASSIFIER_BUILDER_TYPE extends EncodingJarClassifierBuilder<? extends Classifier<OUTCOME_TYPE>,FeatureVector,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE>,OUTCOME_TYPE,ENCODED_OUTCOME_TYPE> - Class in org.cleartk.ml.svmlight: Copyright (c) 2009-2011, Regents of the University of Colorado
All rights reserved.
SvmLightDataWriter_ImplBase(File) - Constructor for class org.cleartk.ml.svmlight.SvmLightDataWriter_ImplBase
SvmLightModel - Class in org.cleartk.ml.svmlight.model: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
SvmLightRank - Class in org.cleartk.ml.svmlight.rank: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SvmLightRank(FeaturesEncoder<FeatureVector>, OutcomeEncoder<Double, Double>, SvmLightModel) - Constructor for class org.cleartk.ml.svmlight.rank.SvmLightRank
SvmLightRankBuilder - Class in org.cleartk.ml.svmlight.rank: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SvmLightRankBuilder() - Constructor for class org.cleartk.ml.svmlight.rank.SvmLightRankBuilder
SvmLightRankDataWriter - Class in org.cleartk.ml.svmlight.rank: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SvmLightRankDataWriter(File) - Constructor for class org.cleartk.ml.svmlight.rank.SvmLightRankDataWriter
SvmLightRegression - Class in org.cleartk.ml.svmlight: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SvmLightRegression(FeaturesEncoder<FeatureVector>, OutcomeEncoder<Double, Double>, SvmLightModel) - Constructor for class org.cleartk.ml.svmlight.SvmLightRegression
SvmLightRegressionBuilder - Class in org.cleartk.ml.svmlight: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SvmLightRegressionBuilder() - Constructor for class org.cleartk.ml.svmlight.SvmLightRegressionBuilder
SvmLightRegressionDataWriter - Class in org.cleartk.ml.svmlight: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SvmLightRegressionDataWriter(File) - Constructor for class org.cleartk.ml.svmlight.SvmLightRegressionDataWriter
SvmLightStringOutcomeClassifier - Class in org.cleartk.ml.svmlight: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
SvmLightStringOutcomeClassifier(FeaturesEncoder<FeatureVector>, OutcomeEncoder<String, Integer>, Map<Integer, SvmLightModel>, Map<Integer, Sigmoid>) - Constructor for class org.cleartk.ml.svmlight.SvmLightStringOutcomeClassifier
SvmLightStringOutcomeClassifierBuilder - Class in org.cleartk.ml.svmlight: Copyright (c) 2007-2011, Regents of the University of Colorado
All rights reserved.
SvmLightStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.svmlight.SvmLightStringOutcomeClassifierBuilder
SvmLightStringOutcomeDataWriter - Class in org.cleartk.ml.svmlight: Copyright (c) 2009, Regents of the University of Colorado
All rights reserved.
SvmLightStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.svmlight.SvmLightStringOutcomeDataWriter
SyntacticFirstChildOfGrandparentOfLeafExtractor<T extends Annotation> - Class in org.cleartk.feature.syntax: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SyntacticFirstChildOfGrandparentOfLeafExtractor() - Constructor for class org.cleartk.feature.syntax.SyntacticFirstChildOfGrandparentOfLeafExtractor
SyntacticLeafToLeafPathPartsExtractor<T extends Annotation,U extends Annotation> - Class in org.cleartk.feature.syntax: Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.
SyntacticLeafToLeafPathPartsExtractor() - Constructor for class org.cleartk.feature.syntax.SyntacticLeafToLeafPathPartsExtractor
SyntacticPathExtractor - Class in org.cleartk.feature.syntax: Copyright (c) 2007-2008, Regents of the University of Colorado
All rights reserved.
SyntacticPathExtractor(FeatureExtractor1<TreebankNode>, boolean) - Constructor for class org.cleartk.feature.syntax.SyntacticPathExtractor
SyntacticPathExtractor(FeatureExtractor1<TreebankNode>) - Constructor for class org.cleartk.feature.syntax.SyntacticPathExtractor: This constructor defaults to a full rather than a partial path.
SYSTEM_VIEW - Static variable in interface org.cleartk.eval.EvaluationConstants
SYSTEM_VIEW_NAME - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation
SYSTEM_VIEW_NAME - Static variable in class org.cleartk.timeml.eval.TempEval2010Evaluation

T

tAbbreviationPattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer

tAbbreviationRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer

tag(List<String>) - Method in class org.cleartk.opennlp.tools.parser.CasPosTagger

tag(String[]) - Method in class org.cleartk.opennlp.tools.parser.CasPosTagger

tag(String) - Method in class org.cleartk.opennlp.tools.parser.CasPosTagger

tag(String[], Object[]) - Method in class org.cleartk.opennlp.tools.parser.CasPosTagger

TAG_REGEX - Static variable in class org.cleartk.corpus.ace2005.Ace2005GoldReader

taggerName - Variable in class org.cleartk.corpus.propbank.util.Propbank

target - Variable in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase.SourceTargetPair

targetExtractors - Variable in class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase

TargetPathExtractor - Class in org.cleartk.feature.syntax

TargetPathExtractor() - Constructor for class org.cleartk.feature.syntax.TargetPathExtractor

TempEval2007Writer - Class in org.cleartk.corpus.timeml

TempEval2007Writer() - Constructor for class org.cleartk.corpus.timeml.TempEval2007Writer

TempEval2010CollectionReader - Class in org.cleartk.corpus.timeml

TempEval2010CollectionReader() - Constructor for class org.cleartk.corpus.timeml.TempEval2010CollectionReader

TempEval2010Evaluation - Class in org.cleartk.timeml.eval

TempEval2010Evaluation(File, File, File, List<String>, String, String, List<AnalysisEngineDescription>, List<? extends ModelInfo<?>>) - Constructor for class org.cleartk.timeml.eval.TempEval2010Evaluation

TempEval2010Evaluation.XMIReader - Class in org.cleartk.timeml.eval

TempEval2010Evaluation.XMIReader() - Constructor for class org.cleartk.timeml.eval.TempEval2010Evaluation.XMIReader

TempEval2010GoldAnnotator - Class in org.cleartk.corpus.timeml

TempEval2010GoldAnnotator() - Constructor for class org.cleartk.corpus.timeml.TempEval2010GoldAnnotator

TempEval2010Main - Class in org.cleartk.timeml.eval

TempEval2010Main() - Constructor for class org.cleartk.timeml.eval.TempEval2010Main

TempEval2010TaskAAttributes - Class in org.cleartk.timeml.eval

TempEval 2010 task A: time attributes Best reported accuracies in TempEval 2010: type: 0.98 value: 0.85
Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

TempEval2010TaskAAttributes() - Constructor for class org.cleartk.timeml.eval.TempEval2010TaskAAttributes

TempEval2010TaskAExtents - Class in org.cleartk.timeml.eval

TempEval 2010 task A: time extents Best reported token-level scores in TempEval 2010: precision: 0.92 recall: 0.91 F1: 0.86
Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

TempEval2010TaskAExtents() - Constructor for class org.cleartk.timeml.eval.TempEval2010TaskAExtents

TempEval2010TaskBAttributes - Class in org.cleartk.timeml.eval

TempEval 2010 task B: event attributes Best reported accuracies in TempEval 2010: polarity: 0.99 modality: 0.99 tense: 0.92 aspect: 0.98 class: 0.79
Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

TempEval2010TaskBAttributes() - Constructor for class org.cleartk.timeml.eval.TempEval2010TaskBAttributes

TempEval2010TaskBExtents - Class in org.cleartk.timeml.eval

TempEval 2010 task B: event extents Best reported token-level scores in TempEval 2010: precision: 0.83 recall: 0.88 F1: 0.83
Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

TempEval2010TaskBExtents() - Constructor for class org.cleartk.timeml.eval.TempEval2010TaskBExtents

TempEval2010TaskC - Class in org.cleartk.timeml.eval

TempEval 2010 task C: event to same sentence time.

TempEval2010TaskC() - Constructor for class org.cleartk.timeml.eval.TempEval2010TaskC

TempEval2010TaskD - Class in org.cleartk.timeml.eval

TempEval 2010 task D: event to document creation time Best reported precision in TempEval 2010: 0.82
Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

TempEval2010TaskD() - Constructor for class org.cleartk.timeml.eval.TempEval2010TaskD

TempEval2010TaskE - Class in org.cleartk.timeml.eval

TempEval 2010 task E: main event to next sentence main event Best reported precision in TempEval 2010: 0.58
Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

TempEval2010TaskE() - Constructor for class org.cleartk.timeml.eval.TempEval2010TaskE

TempEval2010TaskF - Class in org.cleartk.timeml.eval

TempEval 2010 task F: event to subordinated event Best reported precision in TempEval 2010: 0.66
Copyright (c) 2011, Regents of the University of Colorado
All rights reserved.

TempEval2010TaskF() - Constructor for class org.cleartk.timeml.eval.TempEval2010TaskF

TempEval2010Writer - Class in org.cleartk.corpus.timeml

TempEval2010Writer() - Constructor for class org.cleartk.corpus.timeml.TempEval2010Writer

TempEval2013Evaluation - Class in org.cleartk.timeml.eval

Trains and evaluates event, time and temporal relation models on the TempEval 2013 data.

TempEval2013Evaluation(File, ImmutableMultimap<Model<?>, Model.Params>, List<File>, boolean, boolean) - Constructor for class org.cleartk.timeml.eval.TempEval2013Evaluation

TempEval2013Evaluation.CopyEventsAndTimes - Class in org.cleartk.timeml.eval

TempEval2013Evaluation.CopyEventsAndTimes() - Constructor for class org.cleartk.timeml.eval.TempEval2013Evaluation.CopyEventsAndTimes

TempEval2013Evaluation.CopyTextAndDocumentCreationTime - Class in org.cleartk.timeml.eval

TempEval2013Evaluation.CopyTextAndDocumentCreationTime() - Constructor for class org.cleartk.timeml.eval.TempEval2013Evaluation.CopyTextAndDocumentCreationTime

TempEval2013Evaluation.FixTimeML - Class in org.cleartk.timeml.eval

TempEval2013Evaluation.FixTimeML() - Constructor for class org.cleartk.timeml.eval.TempEval2013Evaluation.FixTimeML

TempEval2013Evaluation.SetTemporalLinkIDs - Class in org.cleartk.timeml.eval

TempEval2013Evaluation.SetTemporalLinkIDs() - Constructor for class org.cleartk.timeml.eval.TempEval2013Evaluation.SetTemporalLinkIDs

TempEval2013Evaluation.ShrinkTimesContainingEvents - Class in org.cleartk.timeml.eval

TempEval2013Evaluation.ShrinkTimesContainingEvents() - Constructor for class org.cleartk.timeml.eval.TempEval2013Evaluation.ShrinkTimesContainingEvents

TempEval2013Evaluation.UseInferredTlinks - Class in org.cleartk.timeml.eval

TempEval2013Evaluation.UseInferredTlinks() - Constructor for class org.cleartk.timeml.eval.TempEval2013Evaluation.UseInferredTlinks

TempEval2013Writer - Class in org.cleartk.corpus.timeml

Write events, times and temporal relations in the TempEval 2013 format.

TempEval2013Writer() - Constructor for class org.cleartk.corpus.timeml.TempEval2013Writer

TemporalLinkAnnotator_ImplBase<SOURCE extends org.cleartk.timeml.type.Anchor,TARGET extends org.cleartk.timeml.type.Anchor> - Class in org.cleartk.timeml.tlink

TemporalLinkAnnotator_ImplBase(Class<SOURCE>, Class<TARGET>, String...) - Constructor for class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase

TemporalLinkAnnotator_ImplBase.SourceTargetPair - Class in org.cleartk.timeml.tlink

TemporalLinkAnnotator_ImplBase.SourceTargetPair(SOURCE, TARGET) - Constructor for class org.cleartk.timeml.tlink.TemporalLinkAnnotator_ImplBase.SourceTargetPair

TemporalLinkEventToDocumentCreationTimeAnnotator - Class in org.cleartk.timeml.tlink

TemporalLinkEventToDocumentCreationTimeAnnotator() - Constructor for class org.cleartk.timeml.tlink.TemporalLinkEventToDocumentCreationTimeAnnotator

TemporalLinkEventToSameSentenceTimeAnnotator - Class in org.cleartk.timeml.tlink

TemporalLinkEventToSameSentenceTimeAnnotator() - Constructor for class org.cleartk.timeml.tlink.TemporalLinkEventToSameSentenceTimeAnnotator

TemporalLinkEventToSubordinatedEventAnnotator - Class in org.cleartk.timeml.tlink

TemporalLinkEventToSubordinatedEventAnnotator() - Constructor for class org.cleartk.timeml.tlink.TemporalLinkEventToSubordinatedEventAnnotator

TemporalLinkMainEventToNextSentenceMainEventAnnotator - Class in org.cleartk.timeml.tlink

TemporalLinkMainEventToNextSentenceMainEventAnnotator() - Constructor for class org.cleartk.timeml.tlink.TemporalLinkMainEventToNextSentenceMainEventAnnotator

TemporalLinkModelInfo - Class in org.cleartk.timeml.eval

TemporalLinkModelInfo(CleartkInternalModelFactory, String[]) - Constructor for class org.cleartk.timeml.eval.TemporalLinkModelInfo

TemporalLinkModelInfo(CleartkInternalModelFactory) - Constructor for class org.cleartk.timeml.eval.TemporalLinkModelInfo

terminal - Variable in class org.cleartk.corpus.propbank.util.Propbank

terminalNumber - Variable in class org.cleartk.corpus.propbank.util.PropbankNodeRelation

terminalNumber - Variable in class org.cleartk.corpus.propbank.util.PropbankTerminalRelation

test(CollectionReader, File) - Method in class org.cleartk.eval.Evaluation_ImplBase

Evaluates a model on a set of testing data.

test(CollectionReader, File) - Method in class org.cleartk.examples.chunking.EvaluateNamedEntityChunker

test(CollectionReader, File) - Method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation

test(CollectionReader, File) - Method in class org.cleartk.timeml.eval.TempEval2010Evaluation

test(CollectionReader, File) - Method in class org.cleartk.timeml.eval.TempEval2013Evaluation

TEST_FOLDS - Static variable in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader

testDescriptorFiles(String) - Static method in class org.cleartk.test.util.LicenseTestUtil

testFiles(String, IOFileFilter) - Static method in class org.cleartk.test.util.LicenseTestUtil

testFiles(String, IOFileFilter, List<String>, List<String>) - Static method in class org.cleartk.test.util.LicenseTestUtil

testFilesGPL(String, IOFileFilter) - Static method in class org.cleartk.test.util.LicenseTestUtil

testFilesGPL(String, IOFileFilter, List<String>, List<String>) - Static method in class org.cleartk.test.util.LicenseTestUtil

testJavaFiles(String) - Static method in class org.cleartk.test.util.LicenseTestUtil

testJavaFiles(String, List<String>, List<String>) - Static method in class org.cleartk.test.util.LicenseTestUtil

testJavaFilesGPL(String) - Static method in class org.cleartk.test.util.LicenseTestUtil

testJavaFilesGPL(String, List<String>, List<String>) - Static method in class org.cleartk.test.util.LicenseTestUtil

testNoDescriptorsInSrc(String) - Static method in class org.cleartk.test.util.DescriptorTestUtil

testParameterDefinitions(String, String...) - Static method in class org.cleartk.test.util.ParametersTestUtil

testParameterDefinitions(Iterator<File>) - Static method in class org.cleartk.test.util.ParametersTestUtil

testType(JCas, TOP) - Static method in class org.cleartk.test.util.TypeTestUtil

testTypeSystem(JCas) - Static method in class org.cleartk.test.util.TypeTestUtil

TextSliceExtractor<T extends Annotation> - Class in org.cleartk.feature

TextSliceExtractor(int, int) - Constructor for class org.cleartk.feature.TextSliceExtractor

Create an extractor for a given slice of the text.

TextSliceExtractor(int) - Constructor for class org.cleartk.feature.TextSliceExtractor

Create an extractor for a slice of text from a single offset to the end of the string.

TFIDF_EXTRACTOR_KEY - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator

tfIdfCentroidSimilarityUri - Variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator

TfidfExtractor<OUTCOME_T,FOCUS_T extends Annotation> - Class in org.cleartk.ml.feature.transform.extractor

Transforms count features produced by its subextractor into TF*IDF values

TfidfExtractor(String) - Constructor for class org.cleartk.ml.feature.transform.extractor.TfidfExtractor

TfidfExtractor(String, FeatureExtractor1<FOCUS_T>) - Constructor for class org.cleartk.ml.feature.transform.extractor.TfidfExtractor

TfidfExtractor.IDFMap - Class in org.cleartk.ml.feature.transform.extractor

TfidfExtractor.IDFMap() - Constructor for class org.cleartk.ml.feature.transform.extractor.TfidfExtractor.IDFMap

tfIdfUri - Variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator

threeWordAbbreviationPatterns - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer

threeWordAbbreviationRegexes - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer

TimeAnnotator - Class in org.cleartk.timeml.time

TimeAnnotator() - Constructor for class org.cleartk.timeml.time.TimeAnnotator

TIMEML_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TimeMlGoldAnnotator

TimeMlAnnotate - Class in org.cleartk.timeml

Command line utility for annotating plain text files with TimeML annotations.

TimeMlAnnotate() - Constructor for class org.cleartk.timeml.TimeMlAnnotate

TimeMlAnnotate.AddEmptyDCT - Class in org.cleartk.timeml

TimeMlAnnotate.AddEmptyDCT() - Constructor for class org.cleartk.timeml.TimeMlAnnotate.AddEmptyDCT

TimeMlGoldAnnotator - Class in org.cleartk.corpus.timeml

TimeMlGoldAnnotator() - Constructor for class org.cleartk.corpus.timeml.TimeMlGoldAnnotator

TimeMlUtil - Class in org.cleartk.corpus.timeml

TimeMlUtil() - Constructor for class org.cleartk.corpus.timeml.TimeMlUtil

TimeModelInfo - Class in org.cleartk.timeml.eval

TimeModelInfo(String, CleartkInternalModelFactory, String[]) - Constructor for class org.cleartk.timeml.eval.TimeModelInfo

TimeModelInfo(String, CleartkInternalModelFactory) - Constructor for class org.cleartk.timeml.eval.TimeModelInfo

TimeTypeAnnotator - Class in org.cleartk.timeml.time

TimeTypeAnnotator() - Constructor for class org.cleartk.timeml.time.TimeTypeAnnotator

TimeWordsExtractor<T extends Annotation> - Class in org.cleartk.timeml.util

TimeWordsExtractor() - Constructor for class org.cleartk.timeml.util.TimeWordsExtractor

TIMEX_ATTRIBUTES_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader

TIMEX_EXTENTS_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader

TkLibSvmBooleanOutcomeClassifierBuilder - Class in org.cleartk.ml.libsvm.tk

A class that provided interfaces to train, package and unpackage a TreeKernelSvmBooleanOutcomeClassifier into a jar file.

TkLibSvmBooleanOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.libsvm.tk.TkLibSvmBooleanOutcomeClassifierBuilder

TkLibSvmBooleanOutcomeDataWriter - Class in org.cleartk.ml.libsvm.tk

The data writer for tree kernel svm light.

TkLibSvmBooleanOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.libsvm.tk.TkLibSvmBooleanOutcomeDataWriter

Constructor for the Tree Kernel LIBSVM data writer.

TkLibSvmStringOutcomeClassifierBuilder - Class in org.cleartk.ml.libsvm.tk

A class that provided interfaces to package and unpackage a TreeKernelSvmStringOutcomeClassifier into a jar file.

TkLibSvmStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.libsvm.tk.TkLibSvmStringOutcomeClassifierBuilder

TkLibSvmStringOutcomeDataWriter - Class in org.cleartk.ml.libsvm.tk

A class that provided interfaces to train, package and unpackage a TreeKernelSvmBooleanOutcomeClassifier into a jar file.

TkLibSvmStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.libsvm.tk.TkLibSvmStringOutcomeDataWriter

TkSupportVector - Class in org.cleartk.ml.tksvmlight.model

TkSupportVector(double, TreeFeatureVector) - Constructor for class org.cleartk.ml.tksvmlight.model.TkSupportVector

TkSvmLightBooleanOutcomeClassifierBuilder - Class in org.cleartk.ml.tksvmlight

A class that provided interfaces to train, package and unpackage a TreeKernelSvmBooleanOutcomeClassifier into a jar file.

TkSvmLightBooleanOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.tksvmlight.TkSvmLightBooleanOutcomeClassifierBuilder

TkSvmLightBooleanOutcomeDataWriter - Class in org.cleartk.ml.tksvmlight

The data writer for tree kernel svm light.

TkSvmLightBooleanOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.tksvmlight.TkSvmLightBooleanOutcomeDataWriter

TkSvmLightStringOutcomeClassifierBuilder - Class in org.cleartk.ml.tksvmlight

A class that provided interfaces to package and unpackage a TreeKernelSvmStringOutcomeClassifier into a jar file.

TkSvmLightStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.tksvmlight.TkSvmLightStringOutcomeClassifierBuilder

TkSvmLightStringOutcomeDataWriter - Class in org.cleartk.ml.tksvmlight

TkSvmLightStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.tksvmlight.TkSvmLightStringOutcomeDataWriter

Constructor for the One verse All Tree Kernel SVMlight data writer.

TLINK_DCT_EVENT_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader

TLINK_MAIN_EVENTS_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader

TLINK_SUBORDINATED_EVENTS_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader

TLINK_TIMEX_EVENT_VIEW_NAME - Static variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader

toArray() - Method in class org.cleartk.ml.util.featurevector.ArrayFeatureVector

toCSV() - Method in class org.cleartk.eval.util.ConfusionMatrix

Outputs the ConfusionMatrix as comma-separated values for easy import into spreadsheets

toElement(AnnotationFS) - Method in class org.cleartk.corpus.timeml.TempEval2013Writer

toHTML() - Method in class org.cleartk.eval.util.ConfusionMatrix

Outputs Confusion Matrix in an HTML table.

toInstance(List<Feature>) - Method in class org.cleartk.ml.mallet.MalletClassifier_ImplBase

toInstances(List<OUTCOME_TYPE>, List<List<Feature>>) - Static method in class org.cleartk.ml.Instances

Create a list of Instances from a list of outcomes and a list of feature-lists.

toInstances(List<List<Feature>>) - Method in class org.cleartk.ml.mallet.MalletClassifier_ImplBase

Token - Class in org.cleartk.token.tokenizer

Token(int, int, String) - Constructor for class org.cleartk.token.tokenizer.Token

TokenAnnotator - Class in org.cleartk.token.tokenizer

TokenAnnotator() - Constructor for class org.cleartk.token.tokenizer.TokenAnnotator

tokenBuilder - Variable in class org.cleartk.test.util.DefaultTestBase

TokenComponents - Class in org.cleartk.token

TokenComponents() - Constructor for class org.cleartk.token.TokenComponents

tokenFeatureExtractors - Variable in class org.cleartk.timeml.event.EventAnnotator

tokenField - Variable in class org.cleartk.summarization.SumBasicAnnotator

Tokenizer - Class in org.cleartk.clearnlp

Tokenizer() - Constructor for class org.cleartk.clearnlp.Tokenizer

Tokenizer - Class in org.cleartk.opennlp.tools

An OpenNLP Tokenizer that uses the ClearTK type system.

Tokenizer() - Constructor for class org.cleartk.opennlp.tools.Tokenizer

Tokenizer - Interface in org.cleartk.token.tokenizer

Tokenizer_ImplBase<TOKEN_TYPE extends Annotation> - Class in org.cleartk.clearnlp

Tokenizer_ImplBase() - Constructor for class org.cleartk.clearnlp.Tokenizer_ImplBase

Tokenizer_ImplBase - Class in org.cleartk.token.tokenizer

Tokenizer_ImplBase() - Constructor for class org.cleartk.token.tokenizer.Tokenizer_ImplBase

TokenOps<TOKEN_TYPE> - Interface in org.cleartk.clearnlp

Defines common set of token data type operations used to convert to and query from the target type system

TokenPosWriter - Class in org.cleartk.token.pos

TokenPosWriter() - Constructor for class org.cleartk.token.pos.TokenPosWriter

TokenTextForSelectedPosExtractor - Class in org.cleartk.feature.token

TokenTextForSelectedPosExtractor(Collection<String>) - Constructor for class org.cleartk.feature.token.TokenTextForSelectedPosExtractor

TokenTextForSelectedPosExtractor(String...) - Constructor for class org.cleartk.feature.token.TokenTextForSelectedPosExtractor

tokenType - Variable in class org.cleartk.token.pos.PosAnnotator

toMaxentString() - Method in class org.cleartk.ml.opennlp.maxent.encoder.ContextValues

topKSequences(List<String>) - Method in class org.cleartk.opennlp.tools.parser.CasPosTagger

topKSequences(String[]) - Method in class org.cleartk.opennlp.tools.parser.CasPosTagger

This method will only return a single sequence corresponding to the part-of-speech tags that have already been assigned to the tokens in the CAS as part of some upstream processing that precedes running of the ParserAnnotator.

topKSequences(String[], Object[]) - Method in class org.cleartk.opennlp.tools.parser.CasPosTagger

TopTreebankNode - Class in org.cleartk.util.treebank

TopTreebankNode() - Constructor for class org.cleartk.util.treebank.TopTreebankNode

toString() - Method in class org.cleartk.corpus.genia.pos.util.Span

toString() - Method in class org.cleartk.corpus.penntreebank.ListSpecification

toString() - Method in class org.cleartk.corpus.penntreebank.RangeSpecification

toString() - Method in class org.cleartk.corpus.propbank.util.Propbank

Re-generate the Propbank format line that this object was parsed from.

toString() - Method in class org.cleartk.corpus.propbank.util.PropbankCorefRelation

toString() - Method in class org.cleartk.corpus.propbank.util.PropbankNodeRelation

toString() - Method in class org.cleartk.corpus.propbank.util.PropbankRelation

Re-generate the text that this object was parsed from.

toString() - Method in class org.cleartk.corpus.propbank.util.PropbankSplitRelation

toString() - Method in class org.cleartk.corpus.propbank.util.PropbankTerminalRelation

toString() - Method in class org.cleartk.corpus.propbank.util.Proplabel

Re-generate the Propbank text that this object was parsed from.

toString() - Method in class org.cleartk.eval.AnnotationStatistics

toString() - Method in class org.cleartk.eval.util.ConfusionMatrix

toString() - Method in class org.cleartk.ml.feature.FeatureCollection

toString() - Method in class org.cleartk.ml.Feature

toString() - Method in class org.cleartk.ml.Instance

toString() - Method in class org.cleartk.ml.sigmoid.Sigmoid

toString() - Method in class org.cleartk.token.tokenizer.Token

toString() - Method in class org.cleartk.util.PlatformDetection

totalTreebankFiles - Variable in class org.cleartk.corpus.propbank.PropbankGoldReader

toTempEval2007Attributes(AnnotationFS, String) - Static method in class org.cleartk.corpus.timeml.TimeMlUtil

toTimeML(JCas) - Static method in class org.cleartk.corpus.timeml.TempEval2007Writer

toTimeMLAttributes(AnnotationFS, String) - Static method in class org.cleartk.corpus.timeml.TimeMlUtil

toTimeMLElementName(AnnotationFS) - Static method in class org.cleartk.corpus.timeml.TimeMlUtil

toTreebankString(TreebankNode) - Static method in class org.cleartk.syntax.constituent.type.TreebankNodeUtil

Format the TreebankNode as a Penn-Treebank-style parenthesized string.

train(CollectionReader, File) - Method in class org.cleartk.eval.Evaluation_ImplBase

Trains a model on a set of training data.

train(CollectionReader, File) - Method in class org.cleartk.examples.chunking.EvaluateNamedEntityChunker

train(CollectionReader, File) - Method in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation

train(Iterable<Instance<OUTCOME_T>>) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor

train(Iterable<Instance<OUTCOME_T>>) - Method in class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor

train(Iterable<Instance<OUTCOME_T>>) - Method in class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor

train(Iterable<Instance<OUTCOME_T>>) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor

train(Iterable<Instance<OUTCOME_T>>) - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor

train(Iterable<Instance<OUTCOME_T>>) - Method in interface org.cleartk.ml.feature.transform.TrainableExtractor

In the prototypical case, train takes a collection of instances and computes statistics over the values such as computing mean, standard deviation, TF*IDF, etc...

Train - Class in org.cleartk.ml.jar

Command line tool for training a classifier from an output directory that has been filled by a DirectoryDataWriter.

Train() - Constructor for class org.cleartk.ml.jar.Train

train(String, String[]) - Static method in class org.cleartk.ml.tksvmlight.TkSvmLightBooleanOutcomeClassifierBuilder

Train a SVMTK classifier.

train() - Method in class org.cleartk.summarization.SumBasic

train() - Method in class org.cleartk.summarization.Summarize_ImplBase

train(CollectionReader, File) - Method in class org.cleartk.timeml.eval.TempEval2010Evaluation

train(CollectionReader, File) - Method in class org.cleartk.timeml.eval.TempEval2013Evaluation

TRAIN_FOLDS - Static variable in class org.cleartk.corpus.genia.pos.GeniaPosGoldReader

TrainableExtractor<OUTCOME_T> - Interface in org.cleartk.ml.feature.transform

TrainableExtractor_ImplBase<OUTCOME_T> - Class in org.cleartk.ml.feature.transform

TrainableExtractor_ImplBase(String) - Constructor for class org.cleartk.ml.feature.transform.TrainableExtractor_ImplBase

trainAndPackage(File, String...) - Static method in class org.cleartk.ml.jar.JarClassifierBuilder

Loads a classifier builder from the training directory and invokes JarClassifierBuilder.trainClassifier(File, String...) and JarClassifierBuilder.packageClassifier(File).

trainAndTest(List<ITEM_TYPE>, List<ITEM_TYPE>) - Method in class org.cleartk.eval.Evaluation_ImplBase

Train a model on one set of items and test it on another.

trainAndWriteModel(File, String...) - Static method in class org.cleartk.summarization.SumBasicModel

trainClassifier(File, String...) - Method in class org.cleartk.ml.baseline.MeanValueClassifierBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.baseline.MostFrequentValueClassifierBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeClassifierBuilder

trainClassifier(String, String, String[]) - Method in class org.cleartk.ml.crfsuite.CrfSuiteWrapper

trainClassifier(File, String...) - Method in class org.cleartk.ml.jar.JarClassifierBuilder

Train a classifier from a training directory, as prepared by JarClassifierBuilder.saveToTrainingDirectory(File).

trainClassifier(File, String...) - Method in class org.cleartk.ml.liblinear.GenericLibLinearClassifierBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.libsvm.LibSvmClassifierBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.libsvm.tk.TkLibSvmBooleanOutcomeClassifierBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.mallet.grmm.GrmmClassifierBuilder

Parameters:
position type description 0 required path to template file 1 optional inferencer, see GRMM docs for possible values default: LoopyBP 2 optional max-inferencer, see GRMM docs for possible values default: LoopyBP.createForMaxProduct()

trainClassifier(File, String...) - Method in class org.cleartk.ml.mallet.MalletClassifierBuilder_ImplBase

trainClassifier(File, String...) - Method in class org.cleartk.ml.mallet.MalletCrfStringOutcomeClassifierBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.opennlp.maxent.MaxentClassifierBuilder_ImplBase

trainClassifier(File, String...) - Method in class org.cleartk.ml.svmlight.rank.SvmLightRankBuilder

trainClassifier(File, File, String...) - Method in class org.cleartk.ml.svmlight.rank.SvmLightRankBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeClassifierBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.svmlight.SvmLightClassifierBuilder_ImplBase

trainClassifier(File, File, String...) - Method in class org.cleartk.ml.svmlight.SvmLightClassifierBuilder_ImplBase

trainClassifier(File, String...) - Method in class org.cleartk.ml.svmlight.SvmLightRegressionBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeClassifierBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.tksvmlight.TkSvmLightBooleanOutcomeClassifierBuilder

Train this SVMTK classifier.

trainClassifier(File, String...) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifierBuilder

Train the classifier.

trainClassifier(File, String...) - Method in class org.cleartk.ml.viterbi.ViterbiClassifierBuilder

trainClassifier(File, String...) - Method in class org.cleartk.ml.weka.WekaStringOutcomeClassifierBuilder

trainClassifier(File, String...) - Method in class org.cleartk.summarization.classifier.SumBasicClassifierBuilder

TRAINING_NAME - Variable in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeClassifierBuilder

trainingArguments - Variable in class org.cleartk.timeml.eval.ModelInfo

trainingDataFile - Variable in class org.cleartk.ml.baseline.OutcomeOnlyDataWriter

trainingDataFile - Variable in class org.cleartk.ml.jar.EncodingDirectoryDataWriter

trainingDataWriter - Variable in class org.cleartk.ml.baseline.OutcomeOnlyDataWriter

trainingDataWriter - Variable in class org.cleartk.ml.jar.EncodingDirectoryDataWriter

trainingDataWriters - Variable in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeDataWriter

TrainModel - Class in org.cleartk.examples.documentclassification.advanced

TrainModel() - Constructor for class org.cleartk.examples.documentclassification.advanced.TrainModel

TrainModel - Class in org.cleartk.examples.documentclassification.basic

TrainModel() - Constructor for class org.cleartk.examples.documentclassification.basic.TrainModel

TrainModel.Options - Interface in org.cleartk.examples.documentclassification.advanced

TrainModel.Options - Interface in org.cleartk.examples.documentclassification.basic

TrainNamedEntityChunker - Class in org.cleartk.examples.chunking

This class provides a main method that demonstrates how to train a NamedEntityChunker on an annotated corpus of named entities.

TrainNamedEntityChunker() - Constructor for class org.cleartk.examples.chunking.TrainNamedEntityChunker

TrainNamedEntityChunker.MascTextFileFilter - Class in org.cleartk.examples.chunking

An auxiliary class necessary to only load the ".txt" files from the MASC directories.

TrainNamedEntityChunker.MascTextFileFilter() - Constructor for class org.cleartk.examples.chunking.TrainNamedEntityChunker.MascTextFileFilter

TrainNamedEntityChunker.Options - Interface in org.cleartk.examples.chunking

transducer - Variable in class org.cleartk.ml.mallet.MalletCrfStringOutcomeClassifier

transducer - Variable in class org.cleartk.ml.mallet.MalletCrfStringOutcomeClassifierBuilder

transform(Instance<OUTCOME_T>) - Method in class org.cleartk.ml.feature.selection.FeatureSelectionExtractor

transform(Instance<OUTCOME_T>) - Method in class org.cleartk.ml.feature.transform.extractor.CentroidTfidfSimilarityExtractor

transform(Feature) - Method in class org.cleartk.ml.feature.transform.extractor.MinMaxNormalizationExtractor

transform(Feature) - Method in class org.cleartk.ml.feature.transform.extractor.TfidfExtractor

transform(Feature) - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor

transform(Instance<OUTCOME_T>) - Method in class org.cleartk.ml.feature.transform.OneToOneTrainableExtractor_ImplBase

transform(Feature) - Method in class org.cleartk.ml.feature.transform.OneToOneTrainableExtractor_ImplBase

transform(Instance<OUTCOME_T>) - Method in interface org.cleartk.ml.feature.transform.TrainableExtractor

Transforms all features handled by this extractor.

TransformableFeature - Class in org.cleartk.ml.feature.transform

Abstract base class for transformable features.

TransformableFeature(String, List<Feature>) - Constructor for class org.cleartk.ml.feature.transform.TransformableFeature

TREEBANK_VIEW - Static variable in class org.cleartk.corpus.penntreebank.PennTreebankReader

The view containing the parenthesized text of a TreeBank .mrg file.

TreebankAligningAnnotator - Class in org.cleartk.corpus.timeml

TreebankAligningAnnotator() - Constructor for class org.cleartk.corpus.timeml.TreebankAligningAnnotator

treebankDirectory - Variable in class org.cleartk.corpus.propbank.PropbankGoldReader

treebankFiles - Variable in class org.cleartk.corpus.propbank.PropbankGoldReader

TreebankFormatParser - Class in org.cleartk.util.treebank

This class was written to be a stand alone parser for the Penn Treebank data.

TreebankFormatParser() - Constructor for class org.cleartk.util.treebank.TreebankFormatParser

TreebankGoldAnnotator - Class in org.cleartk.corpus.penntreebank

TreebankGoldAnnotator() - Constructor for class org.cleartk.corpus.penntreebank.TreebankGoldAnnotator

TreebankNode - Class in org.cleartk.util.treebank

TreebankNode() - Constructor for class org.cleartk.util.treebank.TreebankNode

TreebankNodeConverter - Class in org.cleartk.corpus.penntreebank

TreebankNodeConverter() - Constructor for class org.cleartk.corpus.penntreebank.TreebankNodeConverter

TreebankNodeUtil - Class in org.cleartk.syntax.constituent.type

TreebankNodeUtil() - Constructor for class org.cleartk.syntax.constituent.type.TreebankNodeUtil

TreebankNodeUtil.TreebankNodePath - Class in org.cleartk.syntax.constituent.type

Representation of a path from one TreebankNode to another, via a common ancestor in the tree.

TreebankNodeUtil.TreebankNodePath(TreebankNode, List<TreebankNode>, List<TreebankNode>) - Constructor for class org.cleartk.syntax.constituent.type.TreebankNodeUtil.TreebankNodePath

TreebankObject - Interface in org.cleartk.util.treebank

TreebankParsingExample - Class in org.cleartk.examples.treebank

TreebankParsingExample() - Constructor for class org.cleartk.examples.treebank.TreebankParsingExample

TreebankParsingExample.Options - Interface in org.cleartk.examples.treebank

TreeFeature - Class in org.cleartk.ml

TreeFeature(Object) - Constructor for class org.cleartk.ml.TreeFeature

TreeFeature(String, Object) - Constructor for class org.cleartk.ml.TreeFeature

TreeFeatureVector - Class in org.cleartk.ml.tksvmlight

TreeFeatureVector() - Constructor for class org.cleartk.ml.tksvmlight.TreeFeatureVector

TreeFeatureVectorFeaturesEncoder - Class in org.cleartk.ml.tksvmlight

TreeFeatureVectorFeaturesEncoder(int, NameNumberNormalizer) - Constructor for class org.cleartk.ml.tksvmlight.TreeFeatureVectorFeaturesEncoder

TreeFeatureVectorFeaturesEncoder(int) - Constructor for class org.cleartk.ml.tksvmlight.TreeFeatureVectorFeaturesEncoder

TreeFeatureVectorFeaturesEncoder() - Constructor for class org.cleartk.ml.tksvmlight.TreeFeatureVectorFeaturesEncoder

TreeKernel - Class in org.cleartk.ml.tksvmlight.model

TreeKernel(double, TreeKernel.ForestSumMethod, TreeKernel.KernelType, boolean) - Constructor for class org.cleartk.ml.tksvmlight.model.TreeKernel

TreeKernel.ForestSumMethod - Enum in org.cleartk.ml.tksvmlight.model

TreeKernel.KernelType - Enum in org.cleartk.ml.tksvmlight.model

TreeKernelSvmBooleanOutcomeClassifier - Class in org.cleartk.ml.tksvmlight

TreeKernelSvmBooleanOutcomeClassifier(FeaturesEncoder<TreeFeatureVector>, OutcomeEncoder<Boolean, Boolean>, TreeKernelSvmModel) - Constructor for class org.cleartk.ml.tksvmlight.TreeKernelSvmBooleanOutcomeClassifier

TreeKernelSvmBooleanOutcomeClassifierBuilder<CLASSIFIER_TYPE extends Classifier<Boolean>> - Class in org.cleartk.ml.tksvmlight

TreeKernelSvmBooleanOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.tksvmlight.TreeKernelSvmBooleanOutcomeClassifierBuilder

TreeKernelSvmBooleanOutcomeDataWriter - Class in org.cleartk.ml.tksvmlight

TreeKernelSvmBooleanOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.tksvmlight.TreeKernelSvmBooleanOutcomeDataWriter

TreeKernelSvmModel - Class in org.cleartk.ml.tksvmlight.model

TreeKernelSvmModel() - Constructor for class org.cleartk.ml.tksvmlight.model.TreeKernelSvmModel

TreeKernelSvmStringOutcomeClassifier - Class in org.cleartk.ml.tksvmlight

TreeKernelSvmStringOutcomeClassifier(FeaturesEncoder<TreeFeatureVector>, OutcomeEncoder<String, Integer>, Map<Integer, TreeKernelSvmModel>) - Constructor for class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifier

Constructor

TreeKernelSvmStringOutcomeClassifierBuilder - Class in org.cleartk.ml.tksvmlight

TreeKernelSvmStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifierBuilder

TreeKernelSvmStringOutcomeDataWriter<CLASSIFIER_BUILDER_TYPE extends TreeKernelSvmStringOutcomeClassifierBuilder> - Class in org.cleartk.ml.tksvmlight

TreeKernelSvmStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeDataWriter

tripleQuotePattern - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer

tripleQuoteRegex - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer

twoWordAbbreviationPatterns - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer

twoWordAbbreviationRegexes - Static variable in class org.cleartk.token.tokenizer.PennTreebankTokenizer

TYPE_REGEX - Static variable in class org.cleartk.util.treebank.TreebankFormatParser

used to identify the type of a consituent in a treebank parse tree.

TypePathExtractor<T extends Annotation> - Class in org.cleartk.ml.feature.extractor

TypePathExtractor(Class<T>, String, boolean, boolean, boolean) - Constructor for class org.cleartk.ml.feature.extractor.TypePathExtractor

This extractor creates features from attributes of an annotation.

TypePathExtractor(Class<T>, String) - Constructor for class org.cleartk.ml.feature.extractor.TypePathExtractor

calls this(type, typePath, false, false, true, jCas)

TypePathFeature - Class in org.cleartk.ml.feature

TypePathFeature(String, Object, String, String) - Constructor for class org.cleartk.ml.feature.TypePathFeature

TypePathFeature(String, Object, String) - Constructor for class org.cleartk.ml.feature.TypePathFeature

typesInitialized - Variable in class org.cleartk.token.pos.PosAnnotator

TypeTestUtil - Class in org.cleartk.test.util

TypeTestUtil() - Constructor for class org.cleartk.test.util.TypeTestUtil

U

uncheckedCast(Object) - Static method in class org.cleartk.util.ReflectionUtil: Perform an unchecked cast based on a type parameter.
UnknownKeyException(String) - Constructor for exception org.cleartk.util.collection.UnknownKeyException
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.baseline.SingleOutcomeClassifierBuilder
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeClassifierBuilder: As the filename of the model is not known the only solution is to write the model back to a temporary file
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.jar.EncodingJarClassifierBuilder
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.jar.JarClassifierBuilder: Load classifier elements from a classifier jar.
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.liblinear.GenericLibLinearClassifierBuilder
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.libsvm.GenericLibSvmClassifierBuilder
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.libsvm.tk.TkLibSvmBooleanOutcomeClassifierBuilder: unpackage the model files found in a JarInputStream.
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.mallet.grmm.GrmmClassifierBuilder
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.mallet.MalletClassifierBuilder_ImplBase
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.mallet.MalletCrfStringOutcomeClassifierBuilder
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.opennlp.maxent.MaxentClassifierBuilder_ImplBase
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.svmlight.SvmLightBooleanOutcomeClassifierBuilder
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.svmlight.SvmLightClassifierBuilder_ImplBase
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeClassifierBuilder
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.tksvmlight.TkSvmLightBooleanOutcomeClassifierBuilder: unpackage the model files found in a JarInputStream.
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeClassifierBuilder: Unpackage the classifier out of a JarInputStream.
unpackageClassifier(JarInputStream) - Method in class org.cleartk.ml.viterbi.ViterbiClassifierBuilder
unpackageClassifier(JarInputStream) - Method in class org.cleartk.summarization.classifier.SummarizationClassifierBuilder
UnsupportedKernelError() - Constructor for exception org.cleartk.ml.svmlight.model.UnsupportedKernelError
unsupportedOperationSetParameter(Throwable, Object, String, String, Object) - Static method in exception org.cleartk.ml.CleartkProcessingException
UP_SEPARATOR - Variable in class org.cleartk.feature.syntax.SyntacticPathExtractor
update(String, OUTCOME_T, int) - Method in class org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.MutualInformationStats
updateStatistics(AnnotationStatistics<String>, JCas, JCas) - Method in class org.cleartk.timeml.eval.ModelInfo
updateStatistics(AnnotationStatistics<String>, JCas, JCas) - Method in class org.cleartk.timeml.eval.TemporalLinkModelInfo
URI - Static variable in class org.cleartk.util.ViewUriUtil: The view where the document Uniform Resource Identifier is placed.
UriCollectionReader() - Constructor for class org.cleartk.util.cr.UriCollectionReader
UriCollectionReader.RejectSystemDirectories - Class in org.cleartk.util.cr
UriCollectionReader.RejectSystemDirectories() - Constructor for class org.cleartk.util.cr.UriCollectionReader.RejectSystemDirectories
UriCollectionReader.RejectSystemFiles - Class in org.cleartk.util.cr
UriCollectionReader.RejectSystemFiles() - Constructor for class org.cleartk.util.cr.UriCollectionReader.RejectSystemFiles
uriCount - Variable in class org.cleartk.util.cr.UriCollectionReader
uriIndex - Variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
uriIter - Variable in class org.cleartk.util.cr.UriCollectionReader
uris - Variable in class org.cleartk.corpus.timeml.TempEval2010CollectionReader
UriToDocumentTextAnnotator() - Constructor for class org.cleartk.util.ae.UriToDocumentTextAnnotator
UriToXmiCasAnnotator() - Constructor for class org.cleartk.util.ae.UriToXmiCasAnnotator
UriToXmiCasAnnotator.XmlScheme - Enum in org.cleartk.util.ae

V

value - Variable in class org.cleartk.ml.baseline.SingleOutcomeClassifierBuilder
value - Variable in class org.cleartk.ml.Feature
value - Variable in class org.cleartk.ml.util.featurevector.FeatureVector.Entry
valueOf(String) - Static method in enum org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation.AnnotatorMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.ml.feature.function.CapitalTypeFeatureFunction.CapitalType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.ml.feature.function.CharacterCategoryPatternFunction.PatternType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.ml.feature.function.CharacterNgramFeatureFunction.Orientation: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.ml.feature.function.FeatureFunctionExtractor.BaseFeatures: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.ml.feature.function.NumericTypeFeatureFunction.NumericType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.ml.tksvmlight.model.CompositeKernel.ComboOperator: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.ml.tksvmlight.model.CompositeKernel.Normalize: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.ml.tksvmlight.model.TreeKernel.ForestSumMethod: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.ml.tksvmlight.model.TreeKernel.KernelType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.summarization.SumBasicAnnotator.TokenField: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.summarization.SumBasicModel.CompositionFunctionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.token.breakit.BreakIteratorAnnotator.BreakIteratorType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cleartk.util.ae.UriToXmiCasAnnotator.XmlScheme: Returns the enum constant of this type with the specified name.
values() - Static method in enum org.cleartk.examples.documentclassification.advanced.DocumentClassificationEvaluation.AnnotatorMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.ml.feature.function.CapitalTypeFeatureFunction.CapitalType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.ml.feature.function.CharacterCategoryPatternFunction.PatternType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.ml.feature.function.CharacterNgramFeatureFunction.Orientation: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.ml.feature.function.FeatureFunctionExtractor.BaseFeatures: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.ml.feature.function.NumericTypeFeatureFunction.NumericType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.ml.feature.selection.MutualInformationFeatureSelectionExtractor.CombineScoreMethod: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.ml.tksvmlight.model.CompositeKernel.ComboOperator: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.ml.tksvmlight.model.CompositeKernel.Normalize: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.ml.tksvmlight.model.TreeKernel.ForestSumMethod: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.ml.tksvmlight.model.TreeKernel.KernelType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.summarization.SumBasicAnnotator.TokenField: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.summarization.SumBasicModel.CompositionFunctionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.token.breakit.BreakIteratorAnnotator.BreakIteratorType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cleartk.util.ae.UriToXmiCasAnnotator.XmlScheme: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Method in class org.cleartk.util.collection.CompressedStringBiMap
variance() - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat
variancePop() - Method in class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat
VerbClauseTemporalAnnotate() - Constructor for class org.cleartk.timeml.tlink.VerbClauseTemporalAnnotate
VerbClauseTemporalAnnotator() - Constructor for class org.cleartk.timeml.tlink.VerbClauseTemporalAnnotator
VerbClauseTemporalTrain() - Constructor for class org.cleartk.timeml.tlink.VerbClauseTemporalTrain
ViewUriUtil() - Constructor for class org.cleartk.util.ViewUriUtil
viterbi(List<List<Feature>>) - Method in class org.cleartk.ml.viterbi.ViterbiClassifier: This implementation of Viterbi requires at most stackSize * sequenceLength calls to the classifier.
ViterbiClassifier(Classifier<OUTCOME_TYPE>, OutcomeFeatureExtractor[]) - Constructor for class org.cleartk.ml.viterbi.ViterbiClassifier
ViterbiClassifierBuilder() - Constructor for class org.cleartk.ml.viterbi.ViterbiClassifierBuilder
ViterbiDataWriter(File, OutcomeFeatureExtractor[]) - Constructor for class org.cleartk.ml.viterbi.ViterbiDataWriter
ViterbiDataWriterFactory() - Constructor for class org.cleartk.ml.viterbi.ViterbiDataWriterFactory

W

WekaFeaturesEncoder() - Constructor for class org.cleartk.ml.weka.WekaFeaturesEncoder
WekaStringOutcomeClassifier(FeaturesEncoder<Instance>, OutcomeEncoder<String, String>) - Constructor for class org.cleartk.ml.weka.WekaStringOutcomeClassifier
WekaStringOutcomeClassifierBuilder() - Constructor for class org.cleartk.ml.weka.WekaStringOutcomeClassifierBuilder
WekaStringOutcomeDataWriter(File, String) - Constructor for class org.cleartk.ml.weka.WekaStringOutcomeDataWriter
WekaStringOutcomeDataWriter(File) - Constructor for class org.cleartk.ml.weka.WekaStringOutcomeDataWriter
WekaTest() - Constructor for class org.cleartk.ml.weka.WekaTest
WhiteSpaceExtractor() - Constructor for class org.cleartk.ml.feature.extractor.WhiteSpaceExtractor
WhiteSpacePattern - Static variable in class org.cleartk.ml.feature.extractor.WhiteSpaceExtractor
WhiteSpaceRegex - Static variable in class org.cleartk.ml.feature.extractor.WhiteSpaceExtractor
windowClasses - Variable in class org.cleartk.opennlp.tools.SentenceAnnotator
write(Instance<OUTCOME_TYPE>) - Method in class org.cleartk.ml.baseline.OutcomeOnlyDataWriter
write(Instance<OUTCOME_TYPE>) - Method in interface org.cleartk.ml.DataWriter
write(Instance<OUTCOME_T>) - Method in class org.cleartk.ml.feature.transform.InstanceDataWriter
write(Instance<OUTCOME_TYPE>) - Method in class org.cleartk.ml.jar.DataWriter_ImplBase
write(List<Instance<OUTCOME_TYPE>>) - Method in class org.cleartk.ml.jar.SequenceDataWriter_ImplBase
write(Instance<OUTCOME_TYPE>) - Method in class org.cleartk.ml.opennlp.maxent.MaxentDataWriter_ImplBase
write(List<Instance<OUTCOME_TYPE>>) - Method in interface org.cleartk.ml.SequenceDataWriter
write(Instance<Double>) - Method in class org.cleartk.ml.svmlight.rank.SvmLightRankDataWriter
write(Instance<T>) - Method in class org.cleartk.ml.util.PublicFieldDataWriter
write(List<Instance<T>>) - Method in class org.cleartk.ml.util.PublicFieldSequenceDataWriter
write(List<Instance<OUTCOME_TYPE>>) - Method in class org.cleartk.ml.viterbi.ViterbiDataWriter
write(Instance<Boolean>) - Method in class org.cleartk.summarization.classifier.SummarizationDataWriter
write(Writer) - Method in class org.cleartk.util.collection.CompressedStringBiMap
write(Writer, boolean) - Method in class org.cleartk.util.collection.CompressedStringBiMap
write(File) - Method in class org.cleartk.util.collection.GenericStringMapper
write(Writer) - Method in class org.cleartk.util.collection.GenericStringMapper
write(File) - Method in interface org.cleartk.util.collection.Writable
write(Writer) - Method in interface org.cleartk.util.collection.Writable
writeAnnotation(JCas, Predicate) - Method in class org.cleartk.corpus.propbank.PropbankFormatWriter
writeAnnotation(JCas, Token) - Method in class org.cleartk.examples.linewriter.Docs2Tokens.TokenAnnotationWriter
writeAnnotation(JCas, Token) - Method in class org.cleartk.token.pos.TokenPosWriter
writeAnnotation(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.annotation.CoveredTextAnnotationWriter
writeAnnotation(JCas, ANNOTATION_TYPE) - Method in interface org.cleartk.util.ae.linewriter.AnnotationWriter
writeBlock(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.block.BlankLineBlockWriter
writeBlock(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.block.DocumentIdBlockWriter
writeBlock(JCas, Annotation) - Method in class org.cleartk.util.ae.linewriter.block.DoNothingBlockWriter
writeBlock(JCas, BLOCK_TYPE) - Method in interface org.cleartk.util.ae.linewriter.BlockWriter
writeEncoded(List<NameNumber>, String) - Method in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeDataWriter
writeEncoded(ENCODED_FEATURES_TYPE, ENCODED_OUTCOME_TYPE) - Method in class org.cleartk.ml.jar.DataWriter_ImplBase: Write the encoded features and encoded outcome to the output directory.
writeEncoded(ENCODED_FEATURES_TYPE, ENCODED_OUTCOME_TYPE) - Method in class org.cleartk.ml.jar.SequenceDataWriter_ImplBase: Write the encoded features and encoded outcome to the output directory.
writeEncoded(FeatureNode[], Integer) - Method in class org.cleartk.ml.liblinear.GenericLibLinearDataWriter
writeEncoded(FeatureVector, ENCODED_OUTCOME_TYPE) - Method in class org.cleartk.ml.libsvm.LibSvmDataWriter
writeEncoded(List<NameNumber>, String[]) - Method in class org.cleartk.ml.mallet.grmm.GrmmDataWriter
writeEncoded(List<NameNumber>, String[], PrintWriter) - Static method in class org.cleartk.ml.mallet.grmm.GrmmDataWriter
writeEncoded(List<NameNumber>, String) - Method in class org.cleartk.ml.mallet.MalletCrfStringOutcomeDataWriter
writeEncoded(List<NameNumber>, String) - Method in class org.cleartk.ml.mallet.MalletDataWriter_ImplBase
writeEncoded(int, FeatureVector, Double) - Method in class org.cleartk.ml.svmlight.rank.SvmLightRankDataWriter
writeEncoded(FeatureVector, ENCODED_OUTCOME_TYPE) - Method in class org.cleartk.ml.svmlight.SvmLightDataWriter_ImplBase
writeEncoded(FeatureVector, Integer) - Method in class org.cleartk.ml.svmlight.SvmLightStringOutcomeDataWriter
writeEncoded(TreeFeatureVector, Boolean) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmBooleanOutcomeDataWriter: Write a line representing the feature vector with the appropriate outcome to be used by the tk_svm_classify command.
writeEncoded(TreeFeatureVector, Integer) - Method in class org.cleartk.ml.tksvmlight.TreeKernelSvmStringOutcomeDataWriter
writeEncoded(Iterable<Feature>, String) - Method in class org.cleartk.ml.weka.WekaStringOutcomeDataWriter
writeEndSequence() - Method in class org.cleartk.ml.crfsuite.CrfSuiteStringOutcomeDataWriter
writeEndSequence() - Method in class org.cleartk.ml.jar.SequenceDataWriter_ImplBase: Write the marker for the end of a sequence.
writeEndSequence() - Method in class org.cleartk.ml.mallet.grmm.GrmmDataWriter
writeEndSequence() - Method in class org.cleartk.ml.mallet.MalletCrfStringOutcomeDataWriter
writeOutcome(File, OUTCOME_TYPE) - Method in class org.cleartk.ml.baseline.SingleOutcomeClassifierBuilder
writeScores - Variable in class org.cleartk.summarization.SummarySentenceWriterAnnotator
wrongAnnotationType(Class<? extends Annotation>, Annotation) - Static method in exception org.cleartk.ml.feature.extractor.CleartkExtractorException
wrongNumberOfAnnotations(Class<? extends Annotation>, int, int) - Static method in exception org.cleartk.ml.feature.extractor.CleartkExtractorException
wsjSpecification - Variable in class org.cleartk.corpus.propbank.PropbankGoldReader

X

XCAS - Static variable in class org.cleartk.util.cr.XReader
XMI - Static variable in class org.cleartk.util.cr.XReader
xmiDirectory - Variable in class org.cleartk.summarization.SumBasic.XMIReader
xmiDirectory - Variable in class org.cleartk.timeml.eval.TempEval2010Evaluation.XMIReader
XmiWriter - Class in org.cleartk.util.ae: This is a simple annotator for writing out XMI files, used by the parsing examples.
XmiWriter() - Constructor for class org.cleartk.util.ae.XmiWriter
XReader() - Constructor for class org.cleartk.util.cr.XReader

Z

ZeroMeanUnitStddevExtractor<OUTCOME_T,FOCUS_T extends Annotation> - Class in org.cleartk.ml.feature.transform.extractor: Scales features produced by its subextractor to have mean=0, stddev=1 for a given feature
ZeroMeanUnitStddevExtractor(String) - Constructor for class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor
ZeroMeanUnitStddevExtractor(String, FeatureExtractor1<FOCUS_T>) - Constructor for class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor
ZeroMeanUnitStddevExtractor.MeanStddevTuple - Class in org.cleartk.ml.feature.transform.extractor
ZeroMeanUnitStddevExtractor.MeanStddevTuple(double, double) - Constructor for class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanStddevTuple
ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat - Class in org.cleartk.ml.feature.transform.extractor
ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat() - Constructor for class org.cleartk.ml.feature.transform.extractor.ZeroMeanUnitStddevExtractor.MeanVarianceRunningStat
ZMUS_EXTRACTOR_KEY - Static variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator
zmusUri - Variable in class org.cleartk.examples.documentclassification.advanced.DocumentClassificationAnnotator

A B C D E F G H I J K L M N O P Q R S T U V W X Z

All Classes